Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AP001160.3-201ENST00000601484 763 ntBASIC22.53■■□□□ 1.2
VCANP13611 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC22.53■■□□□ 1.2
VCANP13611 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
VCANP13611 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.52■■□□□ 1.2
VCANP13611 AL512625.2-201ENST00000417533 625 ntBASIC22.52■■□□□ 1.2
VCANP13611 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC22.52■■□□□ 1.2
VCANP13611 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.52■■□□□ 1.2
VCANP13611 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC22.52■■□□□ 1.2
VCANP13611 OR10C1-204ENST00000622521 1039 ntBASIC22.52■■□□□ 1.2
VCANP13611 AC144652.1-201ENST00000609974 1624 ntBASIC22.52■■□□□ 1.2
VCANP13611 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
VCANP13611 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
VCANP13611 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
VCANP13611 CYP2T3P-201ENST00000601990 817 ntBASIC22.52■■□□□ 1.2
VCANP13611 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC22.52■■□□□ 1.2
VCANP13611 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
VCANP13611 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
VCANP13611 TSPY7P-201ENST00000431358 1114 ntBASIC22.52■■□□□ 1.19
VCANP13611 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC22.52■■□□□ 1.19
VCANP13611 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC22.52■■□□□ 1.19
VCANP13611 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC22.52■■□□□ 1.19
VCANP13611 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.52■■□□□ 1.19
VCANP13611 AL121894.2-201ENST00000602977 491 ntBASIC22.52■■□□□ 1.19
VCANP13611 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VCANP13611 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.51■■□□□ 1.19
VCANP13611 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.51■■□□□ 1.19
VCANP13611 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.51■■□□□ 1.19
VCANP13611 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.51■■□□□ 1.19
VCANP13611 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC22.51■■□□□ 1.19
VCANP13611 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.51■■□□□ 1.19
VCANP13611 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
VCANP13611 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.51■■□□□ 1.19
VCANP13611 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
VCANP13611 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC22.5■■□□□ 1.19
VCANP13611 AC087499.1-201ENST00000418141 1075 ntBASIC22.5■■□□□ 1.19
VCANP13611 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.5■■□□□ 1.19
VCANP13611 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCANP13611 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
VCANP13611 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC22.5■■□□□ 1.19
VCANP13611 AC092865.7-201ENST00000641832 219 ntBASIC22.5■■□□□ 1.19
VCANP13611 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
VCANP13611 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
VCANP13611 AC008694.1-202ENST00000636953 945 ntBASIC22.5■■□□□ 1.19
VCANP13611 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.49■■□□□ 1.19
VCANP13611 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
VCANP13611 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VCANP13611 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.49■■□□□ 1.19
VCANP13611 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
VCANP13611 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC22.49■■□□□ 1.19
VCANP13611 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.49■■□□□ 1.19
VCANP13611 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC22.49■■□□□ 1.19
VCANP13611 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.49■■□□□ 1.19
VCANP13611 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC22.49■■□□□ 1.19
VCANP13611 AC233702.5-201ENST00000584107 538 ntBASIC22.49■■□□□ 1.19
VCANP13611 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC22.49■■□□□ 1.19
VCANP13611 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
VCANP13611 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VCANP13611 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC22.48■■□□□ 1.19
VCANP13611 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
VCANP13611 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.48■■□□□ 1.19
VCANP13611 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC22.48■■□□□ 1.19
VCANP13611 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.48■■□□□ 1.19
VCANP13611 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC22.48■■□□□ 1.19
VCANP13611 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC22.47■■□□□ 1.19
VCANP13611 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
VCANP13611 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC22.47■■□□□ 1.19
VCANP13611 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC22.47■■□□□ 1.19
VCANP13611 TERF1P5-201ENST00000477545 1207 ntBASIC22.47■■□□□ 1.19
VCANP13611 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC22.47■■□□□ 1.19
VCANP13611 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC22.47■■□□□ 1.19
VCANP13611 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
VCANP13611 AC004687.1-201ENST00000579003 1625 ntBASIC22.47■■□□□ 1.19
VCANP13611 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC22.47■■□□□ 1.19
VCANP13611 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC22.47■■□□□ 1.19
VCANP13611 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.47■■□□□ 1.19
VCANP13611 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.47■■□□□ 1.19
VCANP13611 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC22.46■■□□□ 1.19
VCANP13611 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
VCANP13611 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.46■■□□□ 1.19
VCANP13611 AC233263.1-201ENST00000578059 224 ntBASIC22.46■■□□□ 1.19
VCANP13611 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.46■■□□□ 1.19
VCANP13611 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
VCANP13611 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC22.46■■□□□ 1.19
VCANP13611 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.46■■□□□ 1.19
VCANP13611 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC22.46■■□□□ 1.19
VCANP13611 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC22.46■■□□□ 1.19
VCANP13611 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VCANP13611 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VCANP13611 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.46■■□□□ 1.19
VCANP13611 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.46■■□□□ 1.19
VCANP13611 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
VCANP13611 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC22.46■■□□□ 1.19
VCANP13611 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC22.46■■□□□ 1.19
VCANP13611 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VCANP13611 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.45■■□□□ 1.18
VCANP13611 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
VCANP13611 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms