Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC28.66■■■□□ 2.18
COL3A1P02461 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC28.66■■■□□ 2.18
COL3A1P02461 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC28.66■■■□□ 2.18
COL3A1P02461 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC28.66■■■□□ 2.18
COL3A1P02461 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL3A1P02461 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC28.65■■■□□ 2.18
COL3A1P02461 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC28.65■■■□□ 2.18
COL3A1P02461 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC28.65■■■□□ 2.18
COL3A1P02461 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL3A1P02461 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL3A1P02461 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
COL3A1P02461 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.65■■■□□ 2.18
COL3A1P02461 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC28.65■■■□□ 2.18
COL3A1P02461 DBI-210ENST00000542275 757 ntTSL 5 BASIC28.65■■■□□ 2.18
COL3A1P02461 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
COL3A1P02461 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
COL3A1P02461 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL3A1P02461 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL3A1P02461 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
COL3A1P02461 TERT-206ENST00000508104 2486 ntTSL 5 BASIC28.64■■■□□ 2.18
COL3A1P02461 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
COL3A1P02461 AC104187.1-201ENST00000607510 612 ntBASIC28.64■■■□□ 2.17
COL3A1P02461 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC28.64■■■□□ 2.17
COL3A1P02461 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
COL3A1P02461 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC28.64■■■□□ 2.17
COL3A1P02461 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC28.63■■■□□ 2.17
COL3A1P02461 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC28.63■■■□□ 2.17
COL3A1P02461 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
COL3A1P02461 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC28.63■■■□□ 2.17
COL3A1P02461 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC28.63■■■□□ 2.17
COL3A1P02461 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL3A1P02461 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.63■■■□□ 2.17
COL3A1P02461 EEF1DP3-203ENST00000566025 782 ntBASIC28.63■■■□□ 2.17
COL3A1P02461 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
COL3A1P02461 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC28.63■■■□□ 2.17
COL3A1P02461 WWOX-218ENST00000627394 894 ntTSL 5 BASIC28.63■■■□□ 2.17
COL3A1P02461 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL3A1P02461 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC28.63■■■□□ 2.17
COL3A1P02461 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC28.63■■■□□ 2.17
COL3A1P02461 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
COL3A1P02461 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
COL3A1P02461 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC28.62■■■□□ 2.17
COL3A1P02461 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.62■■■□□ 2.17
COL3A1P02461 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC28.62■■■□□ 2.17
COL3A1P02461 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
COL3A1P02461 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC28.62■■■□□ 2.17
COL3A1P02461 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
COL3A1P02461 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL3A1P02461 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL3A1P02461 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC28.61■■■□□ 2.17
COL3A1P02461 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL3A1P02461 HSCB-202ENST00000398941 955 ntTSL 2 BASIC28.61■■■□□ 2.17
COL3A1P02461 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC28.61■■■□□ 2.17
COL3A1P02461 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC28.61■■■□□ 2.17
COL3A1P02461 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC28.61■■■□□ 2.17
COL3A1P02461 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL3A1P02461 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL3A1P02461 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC28.61■■■□□ 2.17
COL3A1P02461 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
COL3A1P02461 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC28.6■■■□□ 2.17
COL3A1P02461 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
COL3A1P02461 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
COL3A1P02461 AC026471.6-201ENST00000622954 1905 ntBASIC28.6■■■□□ 2.17
COL3A1P02461 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
COL3A1P02461 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC28.6■■■□□ 2.17
COL3A1P02461 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC28.6■■■□□ 2.17
COL3A1P02461 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC28.6■■■□□ 2.17
COL3A1P02461 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC28.6■■■□□ 2.17
COL3A1P02461 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC28.6■■■□□ 2.17
COL3A1P02461 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL3A1P02461 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC28.59■■■□□ 2.17
COL3A1P02461 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL3A1P02461 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL3A1P02461 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
COL3A1P02461 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
COL3A1P02461 AL137784.2-201ENST00000607332 1000 ntBASIC28.59■■■□□ 2.17
COL3A1P02461 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL3A1P02461 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL3A1P02461 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
COL3A1P02461 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
COL3A1P02461 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC28.58■■■□□ 2.17
COL3A1P02461 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC28.58■■■□□ 2.17
COL3A1P02461 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
COL3A1P02461 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 GUSBP5-202ENST00000510805 1989 ntBASIC28.57■■■□□ 2.16
COL3A1P02461 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC28.57■■■□□ 2.16
COL3A1P02461 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC28.57■■■□□ 2.16
COL3A1P02461 AC010141.2-201ENST00000452426 721 ntBASIC28.57■■■□□ 2.16
COL3A1P02461 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC28.57■■■□□ 2.16
COL3A1P02461 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC28.57■■■□□ 2.16
COL3A1P02461 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC28.57■■■□□ 2.16
COL3A1P02461 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
COL3A1P02461 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC28.56■■■□□ 2.16
COL3A1P02461 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC28.56■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms