Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 GNAS-250ENST00000491348 1068 ntTSL 319.87■□□□□ 0.771e-6■■■■■ 35.8
SF3B1O75533 GNAS-223ENST00000464788 583 ntTSL 217.26■□□□□ 0.351e-6■■■■■ 35.8
SF3B1O75533 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.26■□□□□ 0.351e-6■■■■■ 35.8
SF3B1O75533 GNAS-249ENST00000490374 675 ntTSL 316.33■□□□□ 0.21e-6■■■■■ 35.8
SF3B1O75533 GNAS-221ENST00000462499 492 ntTSL 215.79■□□□□ 0.121e-6■■■■■ 35.8
SF3B1O75533 GNAS-241ENST00000482112 704 ntTSL 315.79■□□□□ 0.121e-6■■■■■ 35.8
SF3B1O75533 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC14.52□□□□□ -0.081e-6■■■■■ 35.8
SF3B1O75533 GNAS-206ENST00000349036 581 ntTSL 514.49□□□□□ -0.091e-6■■■■■ 35.8
SF3B1O75533 GNAS-219ENST00000453292 632 ntTSL 514.27□□□□□ -0.121e-6■■■■■ 35.8
SF3B1O75533 GNAS-222ENST00000464624 3764 ntTSL 514.13□□□□□ -0.151e-6■■■■■ 35.8
SF3B1O75533 GNAS-209ENST00000371081 730 ntTSL 2 BASIC12.95□□□□□ -0.341e-6■■■■■ 35.8
SF3B1O75533 GNAS-214ENST00000371100 4029 ntTSL 5 BASIC12.89□□□□□ -0.351e-6■■■■■ 35.8
SF3B1O75533 GNAS-252ENST00000493744 812 ntTSL 212.8□□□□□ -0.361e-6■■■■■ 35.8
SF3B1O75533 GNAS-239ENST00000481039 756 ntTSL 512.55□□□□□ -0.41e-6■■■■■ 35.8
SF3B1O75533 GNAS-205ENST00000338783 641 ntTSL 312.43□□□□□ -0.421e-6■■■■■ 35.8
SF3B1O75533 GNAS-217ENST00000423897 736 ntTSL 312.43□□□□□ -0.421e-6■■■■■ 35.8
SF3B1O75533 GNAS-247ENST00000488546 897 ntTSL 512.02□□□□□ -0.491e-6■■■■■ 35.8
SF3B1O75533 GNAS-216ENST00000419558 729 ntTSL 311.82□□□□□ -0.521e-6■■■■■ 35.8
SF3B1O75533 GNAS-208ENST00000371075 2551 ntTSL 1 (best) BASIC10.86□□□□□ -0.671e-6■■■■■ 35.8
SF3B1O75533 GNAS-218ENST00000450130 595 ntTSL 510.23□□□□□ -0.771e-6■■■■■ 35.8
SF3B1O75533 GNAS-204ENST00000313949 2578 ntTSL 1 (best) BASIC10.12□□□□□ -0.791e-6■■■■■ 35.8
SF3B1O75533 GNAS-227ENST00000468895 583 ntTSL 39.25□□□□□ -0.931e-6■■■■■ 35.8
SF3B1O75533 GNAS-251ENST00000492907 790 ntTSL 39.25□□□□□ -0.931e-6■■■■■ 35.8
SF3B1O75533 GNAS-225ENST00000467227 543 ntTSL 38.74□□□□□ -1.011e-6■■■■■ 35.8
SF3B1O75533 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.48□□□□□ -1.531e-6■■■■■ 35.8
SF3B1O75533 MEAF6-209ENST00000487792 832 ntTSL 321.94■■□□□ 1.12e-6■■■■■ 35.8
SF3B1O75533 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC17.69■□□□□ 0.422e-6■■■■■ 35.8
SF3B1O75533 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.8■□□□□ 0.282e-6■■■■■ 35.8
SF3B1O75533 MEAF6-206ENST00000475828 1408 ntTSL 215.12■□□□□ 0.012e-6■■■■■ 35.8
SF3B1O75533 MEAF6-203ENST00000373074 2005 ntTSL 2 BASIC14.58□□□□□ -0.082e-6■■■■■ 35.8
SF3B1O75533 MEAF6-204ENST00000373075 2147 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.132e-6■■■■■ 35.8
SF3B1O75533 MEAF6-208ENST00000487788 1351 ntTSL 26.51□□□□□ -1.372e-6■■■■■ 35.8
SF3B1O75533 STXBP2-207ENST00000595181 632 ntTSL 211.84□□□□□ -0.511e-7■■■■■ 35.8
SF3B1O75533 SELENOI-202ENST00000442141 504 ntTSL 53.01□□□□□ -1.931e-6■■■■■ 35.8
SF3B1O75533 LINC00470-207ENST00000581430 556 ntTSL 58.15□□□□□ -1.15e-6■■■■■ 35.7
SF3B1O75533 ZFPM2-202ENST00000511341 1582 ntTSL 1 (best)21.06■□□□□ 0.963e-6■■■■■ 35.7
SF3B1O75533 TIA1-219ENST00000496452 853 ntTSL 217.98■□□□□ 0.472e-6■■■■■ 35.7
SF3B1O75533 TIA1-213ENST00000481650 549 ntTSL 415.4■□□□□ 0.062e-6■■■■■ 35.7
SF3B1O75533 TIA1-211ENST00000477044 904 ntTSL 58.17□□□□□ -1.12e-6■■■■■ 35.7
SF3B1O75533 TIA1-202ENST00000361692 543 ntTSL 51.1□□□□□ -2.232e-6■■■■■ 35.7
SF3B1O75533 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.441e-6■■■■■ 35.7
SF3B1O75533 SLC7A11-202ENST00000509248 797 ntTSL 53.36□□□□□ -1.871e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC18.74■□□□□ 0.593e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-204ENST00000639040 2568 ntTSL 518.74■□□□□ 0.593e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.553e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-201ENST00000638968 3175 ntTSL 516.49■□□□□ 0.233e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-208ENST00000640357 3488 ntTSL 513.36□□□□□ -0.273e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-206ENST00000639171 5352 ntTSL 511.42□□□□□ -0.583e-6■■■■■ 35.7
SF3B1O75533 AC118553.2-207ENST00000640238 2901 ntTSL 57.02□□□□□ -1.293e-6■■■■■ 35.7
SF3B1O75533 MPP1-206ENST00000417435 970 ntTSL 519.34■□□□□ 0.691e-6■■■■■ 35.7
SF3B1O75533 MPP1-201ENST00000369531 519 ntTSL 313.76□□□□□ -0.211e-6■■■■■ 35.7
SF3B1O75533 SPAG5-207ENST00000580083 978 ntTSL 39.44□□□□□ -0.97e-9■■■■■ 35.7
SF3B1O75533 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.487e-9■■■■■ 35.7
SF3B1O75533 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC23.82■■□□□ 1.47e-9■■■■■ 35.7
SF3B1O75533 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC23.7■■□□□ 1.387e-9■■■■■ 35.7
SF3B1O75533 CTU2-207ENST00000565071 894 ntTSL 223.59■■□□□ 1.377e-9■■■■■ 35.7
SF3B1O75533 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC23.55■■□□□ 1.367e-9■■■■■ 35.7
SF3B1O75533 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.167e-9■■■■■ 35.7
SF3B1O75533 CTU2-208ENST00000566637 1619 ntTSL 221.68■■□□□ 1.067e-9■■■■■ 35.7
SF3B1O75533 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.997e-9■■■■■ 35.7
SF3B1O75533 CTU2-204ENST00000564105 1586 ntTSL 1 (best)20.47■□□□□ 0.877e-9■■■■■ 35.7
SF3B1O75533 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.87■□□□□ 0.457e-9■■■■■ 35.7
SF3B1O75533 CTU2-206ENST00000564921 931 ntTSL 217.21■□□□□ 0.357e-9■■■■■ 35.7
SF3B1O75533 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.85■□□□□ 0.297e-9■■■■■ 35.7
SF3B1O75533 USP8-208ENST00000559329 1917 ntTSL 1 (best)16.51■□□□□ 0.232e-6■■■■■ 35.7
SF3B1O75533 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC15.01□□□□□ -0.012e-6■■■■■ 35.7
SF3B1O75533 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC15.01□□□□□ -0.012e-6■■■■■ 35.7
SF3B1O75533 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.197e-9■■■■■ 35.7
SF3B1O75533 USP8-219ENST00000625664 1568 ntTSL 5 BASIC13.79□□□□□ -0.22e-6■■■■■ 35.7
SF3B1O75533 LSM8-201ENST00000249299 1305 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.217e-9■■■■■ 35.7
SF3B1O75533 YIPF6-201ENST00000374622 6134 ntTSL 2 BASIC13.39□□□□□ -0.277e-9■■■■■ 35.7
SF3B1O75533 RPL37A-212ENST00000600880 425 ntTSL 2 BASIC13.21□□□□□ -0.292e-6■■■■■ 35.7
SF3B1O75533 USP8-212ENST00000560730 1449 ntTSL 1 (best)13.14□□□□□ -0.312e-6■■■■■ 35.7
SF3B1O75533 RPL37A-205ENST00000446558 495 ntTSL 5 BASIC12.04□□□□□ -0.482e-6■■■■■ 35.7
SF3B1O75533 STARD3NL-206ENST00000453225 859 ntTSL 311.51□□□□□ -0.577e-9■■■■■ 35.7
SF3B1O75533 STARD3NL-207ENST00000471550 3653 ntTSL 210.96□□□□□ -0.657e-9■■■■■ 35.7
SF3B1O75533 RPL37A-204ENST00000441179 529 ntTSL 5 BASIC9.2□□□□□ -0.942e-6■■■■■ 35.7
SF3B1O75533 STARD3NL-203ENST00000429075 857 ntTSL 58.95□□□□□ -0.987e-9■■■■■ 35.7
SF3B1O75533 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC7.73□□□□□ -1.177e-9■■■■■ 35.7
SF3B1O75533 LSM8-202ENST00000411938 290 ntTSL 37.71□□□□□ -1.187e-9■■■■■ 35.7
SF3B1O75533 AC004917.1-204ENST00000592441 701 ntTSL 2 BASIC6.91□□□□□ -1.37e-9■■■■■ 35.7
SF3B1O75533 STARD3NL-205ENST00000440144 784 ntTSL 36.08□□□□□ -1.447e-9■■■■■ 35.7
SF3B1O75533 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.512e-6■■■■■ 35.7
SF3B1O75533 USP8-204ENST00000425032 3559 ntTSL 2 BASIC5.39□□□□□ -1.552e-6■■■■■ 35.7
SF3B1O75533 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.582e-6■■■■■ 35.7
SF3B1O75533 USP8-218ENST00000561330 815 ntTSL 1 (best)2.88□□□□□ -1.952e-6■■■■■ 35.7
SF3B1O75533 USP8-211ENST00000560527 535 ntTSL 42.76□□□□□ -1.972e-6■■■■■ 35.7
SF3B1O75533 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.47□□□□□ -2.017e-9■■■■■ 35.7
SF3B1O75533 NUCB1-209ENST00000465524 839 ntTSL 517.25■□□□□ 0.352e-7■■■■■ 35.6
SF3B1O75533 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC25.99■■□□□ 1.751e-6■■■■■ 35.6
SF3B1O75533 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC23.94■■□□□ 1.421e-6■■■■■ 35.6
SF3B1O75533 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.78■■□□□ 1.241e-6■■■■■ 35.6
SF3B1O75533 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 11e-6■■■■■ 35.6
SF3B1O75533 CRBN-215ENST00000639284 2223 ntTSL 5 BASIC13.09□□□□□ -0.317e-6■■■■■ 35.6
SF3B1O75533 CRBN-203ENST00000432408 2203 ntAPPRIS ALT1 TSL 1 (best) BASIC8.03□□□□□ -1.127e-6■■■■■ 35.6
SF3B1O75533 CRBN-210ENST00000491834 5628 ntTSL 1 (best)7.73□□□□□ -1.177e-6■■■■■ 35.6
SF3B1O75533 CRBN-201ENST00000231948 2206 ntAPPRIS P3 TSL 1 (best) BASIC7.6□□□□□ -1.197e-6■■■■■ 35.6
SF3B1O75533 CRBN-202ENST00000424814 2038 ntTSL 54.11□□□□□ -1.757e-6■■■■■ 35.6
SF3B1O75533 ABHD5-206ENST00000463153 631 ntTSL 210.45□□□□□ -0.742e-6■■■■■ 35.5
SF3B1O75533 BCLAF1-210ENST00000529826 2423 ntTSL 58.28□□□□□ -1.086e-6■■■■■ 35.5
Retrieved 100 of 46,956 protein–RNA pairs in 3189.3 ms