Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 REC114-201ENST00000331090 927 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 AC010740.1-201ENST00000417035 684 ntBASIC31.37■■■□□ 2.61
SENP3Q9H4L4 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC31.37■■■□□ 2.61
SENP3Q9H4L4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 METTL26-203ENST00000397664 604 ntTSL 2 BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 NAV2-AS1-201ENST00000526642 660 ntTSL 3 BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 AC025165.5-201ENST00000602802 578 ntBASIC31.36■■■□□ 2.61
SENP3Q9H4L4 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
SENP3Q9H4L4 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 GUSBP6-202ENST00000438529 1198 ntBASIC31.35■■■□□ 2.61
SENP3Q9H4L4 TSPY6P-201ENST00000448518 926 ntBASIC31.35■■■□□ 2.61
SENP3Q9H4L4 AL121832.2-201ENST00000610979 668 ntBASIC31.35■■■□□ 2.61
SENP3Q9H4L4 AC084782.3-201ENST00000612282 578 ntBASIC31.35■■■□□ 2.61
SENP3Q9H4L4 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SENP3Q9H4L4 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 AL353803.4-201ENST00000565882 1934 ntBASIC31.34■■■□□ 2.61
SENP3Q9H4L4 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 UPF3AP2-201ENST00000457924 1132 ntBASIC31.34■■■□□ 2.61
SENP3Q9H4L4 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 ZNF331-218ENST00000513265 739 ntTSL 3 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 AC098934.4-201ENST00000564127 592 ntBASIC31.34■■■□□ 2.61
SENP3Q9H4L4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SENP3Q9H4L4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC31.33■■■□□ 2.61
SENP3Q9H4L4 RSL24D1P2-201ENST00000445584 366 ntBASIC31.33■■■□□ 2.61
SENP3Q9H4L4 AC010141.3-201ENST00000456659 717 ntBASIC31.33■■■□□ 2.61
SENP3Q9H4L4 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
SENP3Q9H4L4 UBE2DNL-204ENST00000602536 740 ntBASIC31.33■■■□□ 2.61
SENP3Q9H4L4 AC009118.3-201ENST00000622896 873 ntBASIC31.33■■■□□ 2.61
SENP3Q9H4L4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC31.33■■■□□ 2.61
SENP3Q9H4L4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC31.32■■■□□ 2.6
SENP3Q9H4L4 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 METTL15-202ENST00000403099 795 ntTSL 5 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC31.31■■■□□ 2.6
SENP3Q9H4L4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 AC007919.2-201ENST00000444110 511 ntBASIC31.3■■■□□ 2.6
SENP3Q9H4L4 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 AC005181.1-201ENST00000604782 1256 ntBASIC31.3■■■□□ 2.6
SENP3Q9H4L4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC31.3■■■□□ 2.6
SENP3Q9H4L4 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms