Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.02■□□□□ 0.79
Ddx56Q9D0R4 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ddx56Q9D0R4 AC126028.2-201ENSMUST00000228100 1833 ntBASIC20.02■□□□□ 0.79
Ddx56Q9D0R4 Arhgap8-207ENSMUST00000172307 1544 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
Ddx56Q9D0R4 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Ddx56Q9D0R4 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Gm7860-201ENSMUST00000121190 879 ntBASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Bax-205ENSMUST00000211365 801 ntTSL 3 BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Ahcyl1-201ENSMUST00000029490 3863 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Maml1-201ENSMUST00000059458 5528 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Grtp1-207ENSMUST00000211128 1416 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Ddx56Q9D0R4 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Gm5540-201ENSMUST00000131852 1848 ntBASIC20■□□□□ 0.79
Ddx56Q9D0R4 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Gm14281-201ENSMUST00000121700 1294 ntBASIC20■□□□□ 0.79
Ddx56Q9D0R4 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Dtd2-202ENSMUST00000085404 1012 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Espn-205ENSMUST00000084114 1645 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20■□□□□ 0.79
Ddx56Q9D0R4 Fam149b-204ENSMUST00000090503 2053 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
Ddx56Q9D0R4 Tm2d1-202ENSMUST00000102793 1027 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Gm12063-201ENSMUST00000148087 715 ntTSL 2 BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Rnaseh1-201ENSMUST00000020959 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
Ddx56Q9D0R4 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
Ddx56Q9D0R4 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Vamp5-201ENSMUST00000074231 553 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Ddx56Q9D0R4 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Ddx56Q9D0R4 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Rnf39-202ENSMUST00000173072 631 ntTSL 2 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Gm10153-201ENSMUST00000084415 522 ntTSL 5 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Ddx56Q9D0R4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms