Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC25.58■■□□□ 1.69
HLA-DOAP06340 AP004607.7-201ENST00000527152 1677 ntBASIC25.58■■□□□ 1.68
HLA-DOAP06340 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25.58■■□□□ 1.68
HLA-DOAP06340 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
HLA-DOAP06340 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HLA-DOAP06340 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HLA-DOAP06340 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC25.57■■□□□ 1.68
HLA-DOAP06340 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HLA-DOAP06340 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC25.57■■□□□ 1.68
HLA-DOAP06340 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
HLA-DOAP06340 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
HLA-DOAP06340 AC104187.1-201ENST00000607510 612 ntBASIC25.56■■□□□ 1.68
HLA-DOAP06340 AC073111.5-205ENST00000641717 521 ntBASIC25.56■■□□□ 1.68
HLA-DOAP06340 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC25.56■■□□□ 1.68
HLA-DOAP06340 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 ID1-201ENST00000376105 1233 ntBASIC25.55■■□□□ 1.68
HLA-DOAP06340 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 AL034346.1-201ENST00000568244 1277 ntBASIC25.55■■□□□ 1.68
HLA-DOAP06340 DUSP8P5-201ENST00000422884 1815 ntBASIC25.55■■□□□ 1.68
HLA-DOAP06340 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.55■■□□□ 1.68
HLA-DOAP06340 AC055733.4-201ENST00000638462 1354 ntBASIC25.55■■□□□ 1.68
HLA-DOAP06340 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HLA-DOAP06340 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
HLA-DOAP06340 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.54■■□□□ 1.68
HLA-DOAP06340 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC25.54■■□□□ 1.68
HLA-DOAP06340 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 CDCA4P2-201ENST00000441182 718 ntBASIC25.54■■□□□ 1.68
HLA-DOAP06340 SPI1-203ENST00000533030 661 ntTSL 2 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
HLA-DOAP06340 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
HLA-DOAP06340 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
HLA-DOAP06340 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
HLA-DOAP06340 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
HLA-DOAP06340 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
HLA-DOAP06340 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC25.53■■□□□ 1.68
HLA-DOAP06340 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.53■■□□□ 1.68
HLA-DOAP06340 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
HLA-DOAP06340 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC25.53■■□□□ 1.68
HLA-DOAP06340 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC25.53■■□□□ 1.68
HLA-DOAP06340 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.53■■□□□ 1.68
HLA-DOAP06340 LINC00526-201ENST00000581067 1875 ntBASIC25.53■■□□□ 1.68
HLA-DOAP06340 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
HLA-DOAP06340 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
HLA-DOAP06340 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC25.52■■□□□ 1.68
HLA-DOAP06340 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC25.52■■□□□ 1.68
HLA-DOAP06340 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
HLA-DOAP06340 RAP2CP1-201ENST00000605103 478 ntBASIC25.52■■□□□ 1.68
HLA-DOAP06340 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC25.52■■□□□ 1.68
HLA-DOAP06340 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.52■■□□□ 1.68
HLA-DOAP06340 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC25.52■■□□□ 1.68
HLA-DOAP06340 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.51■■□□□ 1.67
HLA-DOAP06340 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC25.51■■□□□ 1.67
HLA-DOAP06340 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC25.51■■□□□ 1.67
HLA-DOAP06340 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC25.51■■□□□ 1.67
HLA-DOAP06340 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
HLA-DOAP06340 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
HLA-DOAP06340 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.5■■□□□ 1.67
HLA-DOAP06340 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
HLA-DOAP06340 AC026185.1-201ENST00000445748 174 ntBASIC25.5■■□□□ 1.67
HLA-DOAP06340 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
HLA-DOAP06340 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC25.5■■□□□ 1.67
HLA-DOAP06340 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC25.5■■□□□ 1.67
HLA-DOAP06340 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.5■■□□□ 1.67
HLA-DOAP06340 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC25.5■■□□□ 1.67
HLA-DOAP06340 AC011767.1-201ENST00000617410 1153 ntBASIC25.5■■□□□ 1.67
HLA-DOAP06340 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.49■■□□□ 1.67
HLA-DOAP06340 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
HLA-DOAP06340 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 METTL26-203ENST00000397664 604 ntTSL 2 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC25.49■■□□□ 1.67
HLA-DOAP06340 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
HLA-DOAP06340 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
HLA-DOAP06340 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.48■■□□□ 1.67
HLA-DOAP06340 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.48■■□□□ 1.67
HLA-DOAP06340 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC25.48■■□□□ 1.67
HLA-DOAP06340 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.48■■□□□ 1.67
HLA-DOAP06340 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
HLA-DOAP06340 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
HLA-DOAP06340 TK2-208ENST00000545043 1120 ntTSL 2 BASIC25.48■■□□□ 1.67
HLA-DOAP06340 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC25.48■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms