Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN9O95484 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.92■□□□□ 0.94
CLDN9O95484 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 AC010542.4-201ENST00000563151 1910 ntBASIC20.92■□□□□ 0.94
CLDN9O95484 FAM99A-202ENST00000538190 1989 ntBASIC20.92■□□□□ 0.94
CLDN9O95484 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
CLDN9O95484 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN9O95484 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN9O95484 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN9O95484 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CLDN9O95484 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN9O95484 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
CLDN9O95484 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
CLDN9O95484 OR7E47P-201ENST00000546390 1422 ntBASIC20.91■□□□□ 0.94
CLDN9O95484 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.91■□□□□ 0.94
CLDN9O95484 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.91■□□□□ 0.94
CLDN9O95484 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.91■□□□□ 0.94
CLDN9O95484 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN9O95484 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
CLDN9O95484 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
CLDN9O95484 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN9O95484 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN9O95484 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC20.9■□□□□ 0.94
CLDN9O95484 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 AC010141.3-201ENST00000456659 717 ntBASIC20.9■□□□□ 0.94
CLDN9O95484 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC20.9■□□□□ 0.94
CLDN9O95484 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
CLDN9O95484 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN9O95484 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
CLDN9O95484 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.89■□□□□ 0.94
CLDN9O95484 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.89■□□□□ 0.93
CLDN9O95484 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.89■□□□□ 0.93
CLDN9O95484 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 AL136116.3-201ENST00000402907 1138 ntBASIC20.89■□□□□ 0.93
CLDN9O95484 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.89■□□□□ 0.93
CLDN9O95484 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
CLDN9O95484 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
CLDN9O95484 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.88■□□□□ 0.93
CLDN9O95484 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.88■□□□□ 0.93
CLDN9O95484 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
CLDN9O95484 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
CLDN9O95484 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN9O95484 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.88■□□□□ 0.93
CLDN9O95484 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN9O95484 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN9O95484 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CLDN9O95484 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.88■□□□□ 0.93
CLDN9O95484 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
CLDN9O95484 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.87■□□□□ 0.93
CLDN9O95484 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC20.87■□□□□ 0.93
CLDN9O95484 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC20.87■□□□□ 0.93
CLDN9O95484 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CLDN9O95484 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
CLDN9O95484 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.86■□□□□ 0.93
CLDN9O95484 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CLDN9O95484 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.86■□□□□ 0.93
CLDN9O95484 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
CLDN9O95484 OXCT2P1-201ENST00000447263 1535 ntBASIC20.86■□□□□ 0.93
CLDN9O95484 AC007375.3-201ENST00000600936 2314 ntBASIC20.86■□□□□ 0.93
CLDN9O95484 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.85■□□□□ 0.93
CLDN9O95484 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN9O95484 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN9O95484 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN9O95484 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN9O95484 SLC47A1P1-202ENST00000449666 945 ntBASIC20.85■□□□□ 0.93
CLDN9O95484 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
CLDN9O95484 AC131212.1-201ENST00000613771 668 ntBASIC20.85■□□□□ 0.93
CLDN9O95484 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN9O95484 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN9O95484 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.85■□□□□ 0.93
CLDN9O95484 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CLDN9O95484 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
CLDN9O95484 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms