Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Gm9397-201ENSMUST00000200125 605 ntBASIC26.64■■□□□ 1.86
Pcdha1Q91Y21 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
Pcdha1Q91Y21 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
Pcdha1Q91Y21 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
Pcdha1Q91Y21 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
Pcdha1Q91Y21 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.59■■□□□ 1.85
Pcdha1Q91Y21 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC26.58■■□□□ 1.85
Pcdha1Q91Y21 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC26.57■■□□□ 1.84
Pcdha1Q91Y21 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.57■■□□□ 1.84
Pcdha1Q91Y21 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Pcdha1Q91Y21 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC26.57■■□□□ 1.84
Pcdha1Q91Y21 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
Pcdha1Q91Y21 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26.54■■□□□ 1.84
Pcdha1Q91Y21 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.54■■□□□ 1.84
Pcdha1Q91Y21 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
Pcdha1Q91Y21 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.53■■□□□ 1.84
Pcdha1Q91Y21 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26.53■■□□□ 1.84
Pcdha1Q91Y21 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC26.52■■□□□ 1.84
Pcdha1Q91Y21 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.52■■□□□ 1.84
Pcdha1Q91Y21 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Pcdha1Q91Y21 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
Pcdha1Q91Y21 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
Pcdha1Q91Y21 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Pcdha1Q91Y21 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.5■■□□□ 1.83
Pcdha1Q91Y21 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC26.49■■□□□ 1.83
Pcdha1Q91Y21 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Pcdha1Q91Y21 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Pcdha1Q91Y21 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.47■■□□□ 1.83
Pcdha1Q91Y21 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Pcdha1Q91Y21 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
Pcdha1Q91Y21 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC26.45■■□□□ 1.82
Pcdha1Q91Y21 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Pcdha1Q91Y21 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC26.44■■□□□ 1.82
Pcdha1Q91Y21 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Pcdha1Q91Y21 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.42■■□□□ 1.82
Pcdha1Q91Y21 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.42■■□□□ 1.82
Pcdha1Q91Y21 Cnot6l-203ENSMUST00000122003 2089 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
Pcdha1Q91Y21 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.41■■□□□ 1.82
Pcdha1Q91Y21 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.4■■□□□ 1.82
Pcdha1Q91Y21 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Pcdha1Q91Y21 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.81
Pcdha1Q91Y21 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Pcdha1Q91Y21 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
Pcdha1Q91Y21 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Pcdha1Q91Y21 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.38■■□□□ 1.81
Pcdha1Q91Y21 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Pcdha1Q91Y21 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Pcdha1Q91Y21 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Pcdha1Q91Y21 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Pcdha1Q91Y21 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
Pcdha1Q91Y21 Gm24970-201ENSMUST00000175582 82 ntBASIC26.36■■□□□ 1.81
Pcdha1Q91Y21 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC26.36■■□□□ 1.81
Pcdha1Q91Y21 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Pcdha1Q91Y21 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC26.35■■□□□ 1.81
Pcdha1Q91Y21 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC26.35■■□□□ 1.81
Pcdha1Q91Y21 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.35■■□□□ 1.81
Pcdha1Q91Y21 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Pcdha1Q91Y21 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha1Q91Y21 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha1Q91Y21 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
Pcdha1Q91Y21 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha1Q91Y21 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC26.33■■□□□ 1.81
Pcdha1Q91Y21 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC26.33■■□□□ 1.8
Pcdha1Q91Y21 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pcdha1Q91Y21 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Pcdha1Q91Y21 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
Pcdha1Q91Y21 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Pcdha1Q91Y21 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
Pcdha1Q91Y21 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Pcdha1Q91Y21 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Pcdha1Q91Y21 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Pcdha1Q91Y21 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha1Q91Y21 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha1Q91Y21 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha1Q91Y21 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.26■■□□□ 1.79
Pcdha1Q91Y21 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26.26■■□□□ 1.79
Pcdha1Q91Y21 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
Pcdha1Q91Y21 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Pcdha1Q91Y21 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC26.22■■□□□ 1.79
Pcdha1Q91Y21 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
Pcdha1Q91Y21 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Pcdha1Q91Y21 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
Pcdha1Q91Y21 Reps1-206ENSMUST00000154718 2402 ntTSL 5 BASIC26.2■■□□□ 1.78
Pcdha1Q91Y21 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Pcdha1Q91Y21 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdha1Q91Y21 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdha1Q91Y21 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
Pcdha1Q91Y21 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
Pcdha1Q91Y21 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Pcdha1Q91Y21 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC26.15■■□□□ 1.78
Pcdha1Q91Y21 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
Pcdha1Q91Y21 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Pcdha1Q91Y21 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
Pcdha1Q91Y21 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.13■■□□□ 1.77
Pcdha1Q91Y21 Ryk-203ENSMUST00000175883 2505 ntAPPRIS P3 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pcdha1Q91Y21 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pcdha1Q91Y21 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC26.11■■□□□ 1.77
Pcdha1Q91Y21 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Pcdha1Q91Y21 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC26.1■■□□□ 1.77
Pcdha1Q91Y21 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Retrieved 100 of 76,532 protein–RNA pairs in 59.7 ms