Protein–RNA interactions for Protein: Q8C0D0

Trub1, Probable tRNA pseudouridine synthase 1, mousemouse

Known RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trub1Q8C0D0 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Trub1Q8C0D0 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trub1Q8C0D0 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Trub1Q8C0D0 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Trub1Q8C0D0 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
Trub1Q8C0D0 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Trub1Q8C0D0 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
Trub1Q8C0D0 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Trub1Q8C0D0 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Trub1Q8C0D0 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Trub1Q8C0D0 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Trub1Q8C0D0 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
Trub1Q8C0D0 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
Trub1Q8C0D0 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Trub1Q8C0D0 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Trub1Q8C0D0 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Trub1Q8C0D0 Gm30346-201ENSMUST00000218641 1699 ntBASIC26.26■■□□□ 1.79
Trub1Q8C0D0 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Trub1Q8C0D0 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC26.25■■□□□ 1.79
Trub1Q8C0D0 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC26.25■■□□□ 1.79
Trub1Q8C0D0 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trub1Q8C0D0 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Trub1Q8C0D0 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Trub1Q8C0D0 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Trub1Q8C0D0 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trub1Q8C0D0 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
Trub1Q8C0D0 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Trub1Q8C0D0 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
Trub1Q8C0D0 Zxda-201ENSMUST00000117281 2621 ntBASIC26.21■■□□□ 1.79
Trub1Q8C0D0 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trub1Q8C0D0 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Trub1Q8C0D0 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC26.21■■□□□ 1.79
Trub1Q8C0D0 Gm6345-201ENSMUST00000180378 1691 ntBASIC26.21■■□□□ 1.79
Trub1Q8C0D0 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Trub1Q8C0D0 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
Trub1Q8C0D0 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trub1Q8C0D0 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trub1Q8C0D0 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trub1Q8C0D0 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
Trub1Q8C0D0 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
Trub1Q8C0D0 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
Trub1Q8C0D0 Gm16148-201ENSMUST00000119653 893 ntBASIC26.13■■□□□ 1.77
Trub1Q8C0D0 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trub1Q8C0D0 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
Trub1Q8C0D0 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC26.11■■□□□ 1.77
Trub1Q8C0D0 Gm6206-201ENSMUST00000133472 2199 ntBASIC26.11■■□□□ 1.77
Trub1Q8C0D0 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
Trub1Q8C0D0 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC26.1■■□□□ 1.77
Trub1Q8C0D0 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
Trub1Q8C0D0 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trub1Q8C0D0 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
Trub1Q8C0D0 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.09■■□□□ 1.77
Trub1Q8C0D0 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.08■■□□□ 1.77
Trub1Q8C0D0 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
Trub1Q8C0D0 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trub1Q8C0D0 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
Trub1Q8C0D0 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC26.06■■□□□ 1.76
Trub1Q8C0D0 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.04■■□□□ 1.76
Trub1Q8C0D0 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trub1Q8C0D0 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Trub1Q8C0D0 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Trub1Q8C0D0 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
Trub1Q8C0D0 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Trub1Q8C0D0 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Trub1Q8C0D0 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trub1Q8C0D0 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Trub1Q8C0D0 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC25.96■■□□□ 1.75
Trub1Q8C0D0 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC25.95■■□□□ 1.75
Trub1Q8C0D0 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Trub1Q8C0D0 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC25.93■■□□□ 1.74
Trub1Q8C0D0 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Trub1Q8C0D0 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC25.93■■□□□ 1.74
Trub1Q8C0D0 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
Trub1Q8C0D0 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Trub1Q8C0D0 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC25.91■■□□□ 1.74
Trub1Q8C0D0 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Trub1Q8C0D0 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trub1Q8C0D0 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.73
Trub1Q8C0D0 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trub1Q8C0D0 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Trub1Q8C0D0 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trub1Q8C0D0 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trub1Q8C0D0 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trub1Q8C0D0 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trub1Q8C0D0 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
Trub1Q8C0D0 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC25.85■■□□□ 1.73
Trub1Q8C0D0 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC25.85■■□□□ 1.73
Trub1Q8C0D0 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC25.85■■□□□ 1.73
Trub1Q8C0D0 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
Trub1Q8C0D0 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC25.84■■□□□ 1.73
Trub1Q8C0D0 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Trub1Q8C0D0 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
Trub1Q8C0D0 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
Trub1Q8C0D0 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
Trub1Q8C0D0 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Trub1Q8C0D0 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Trub1Q8C0D0 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
Trub1Q8C0D0 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Trub1Q8C0D0 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC25.78■■□□□ 1.72
Trub1Q8C0D0 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms