Protein–RNA interactions for Protein: Q78T54

Vma21, Vacuolar ATPase assembly integral membrane protein Vma21, mousemouse

Predictions only

Length 101 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vma21Q78T54 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vma21Q78T54 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Vma21Q78T54 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Vma21Q78T54 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Vma21Q78T54 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vma21Q78T54 Gm43445-201ENSMUST00000198564 2091 ntBASIC20.44■□□□□ 0.86
Vma21Q78T54 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vma21Q78T54 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Vma21Q78T54 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Vma21Q78T54 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Vma21Q78T54 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.86
Vma21Q78T54 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Vma21Q78T54 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Vma21Q78T54 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vma21Q78T54 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Vma21Q78T54 Mkrn1-202ENSMUST00000051671 1511 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Vma21Q78T54 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.37■□□□□ 0.85
Vma21Q78T54 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC20.36■□□□□ 0.85
Vma21Q78T54 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Vma21Q78T54 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC20.36■□□□□ 0.85
Vma21Q78T54 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Vma21Q78T54 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC20.35■□□□□ 0.85
Vma21Q78T54 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Vma21Q78T54 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC20.32■□□□□ 0.84
Vma21Q78T54 Arl2bp-201ENSMUST00000034228 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vma21Q78T54 Tmem189-201ENSMUST00000006587 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Vma21Q78T54 Rab2a-201ENSMUST00000060232 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vma21Q78T54 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vma21Q78T54 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vma21Q78T54 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Vma21Q78T54 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vma21Q78T54 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Vma21Q78T54 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Vma21Q78T54 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC20.28■□□□□ 0.84
Vma21Q78T54 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Vma21Q78T54 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Vma21Q78T54 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Vma21Q78T54 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
Vma21Q78T54 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Vma21Q78T54 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Vma21Q78T54 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Vma21Q78T54 Btf3-201ENSMUST00000022163 1091 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Vma21Q78T54 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Vma21Q78T54 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Vma21Q78T54 Gsk3a-201ENSMUST00000071739 2260 ntAPPRIS P2 TSL 2 BASIC20.24■□□□□ 0.83
Vma21Q78T54 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
Vma21Q78T54 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vma21Q78T54 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Vma21Q78T54 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC20.21■□□□□ 0.83
Vma21Q78T54 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
Vma21Q78T54 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vma21Q78T54 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vma21Q78T54 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vma21Q78T54 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Vma21Q78T54 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Vma21Q78T54 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Vma21Q78T54 Gm26115-201ENSMUST00000175605 87 ntBASIC20.19■□□□□ 0.82
Vma21Q78T54 Ppp1cc-201ENSMUST00000086294 1442 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Vma21Q78T54 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Vma21Q78T54 Gm30346-201ENSMUST00000218641 1699 ntBASIC20.17■□□□□ 0.82
Vma21Q78T54 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Vma21Q78T54 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Vma21Q78T54 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
Vma21Q78T54 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Vma21Q78T54 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vma21Q78T54 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Vma21Q78T54 Amer2-203ENSMUST00000225247 2662 ntBASIC20.14■□□□□ 0.82
Vma21Q78T54 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Vma21Q78T54 Peli2-204ENSMUST00000226513 1320 ntBASIC20.14■□□□□ 0.81
Vma21Q78T54 Gm8109-201ENSMUST00000194076 746 ntBASIC20.14■□□□□ 0.81
Vma21Q78T54 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.13■□□□□ 0.81
Vma21Q78T54 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
Vma21Q78T54 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
Vma21Q78T54 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.12■□□□□ 0.81
Vma21Q78T54 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vma21Q78T54 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Vma21Q78T54 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Vma21Q78T54 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vma21Q78T54 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Vma21Q78T54 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Vma21Q78T54 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Vma21Q78T54 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Vma21Q78T54 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.07■□□□□ 0.8
Vma21Q78T54 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Vma21Q78T54 Gm26566-201ENSMUST00000181601 1038 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Vma21Q78T54 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC20.07■□□□□ 0.8
Vma21Q78T54 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Vma21Q78T54 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vma21Q78T54 Gm960-202ENSMUST00000177696 2262 ntAPPRIS P2 TSL 5 BASIC20.06■□□□□ 0.8
Vma21Q78T54 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vma21Q78T54 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Vma21Q78T54 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Vma21Q78T54 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Vma21Q78T54 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vma21Q78T54 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.05■□□□□ 0.8
Vma21Q78T54 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Vma21Q78T54 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Vma21Q78T54 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC20.03■□□□□ 0.8
Vma21Q78T54 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Vma21Q78T54 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms