Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Limch1Q3UH68 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
Limch1Q3UH68 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.85■■■□□ 2.37
Limch1Q3UH68 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Limch1Q3UH68 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Limch1Q3UH68 Tdp2-203ENSMUST00000223804 1136 ntBASIC29.84■■■□□ 2.37
Limch1Q3UH68 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
Limch1Q3UH68 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Limch1Q3UH68 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
Limch1Q3UH68 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
Limch1Q3UH68 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
Limch1Q3UH68 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
Limch1Q3UH68 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Limch1Q3UH68 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Limch1Q3UH68 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
Limch1Q3UH68 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC29.76■■■□□ 2.35
Limch1Q3UH68 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Limch1Q3UH68 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Limch1Q3UH68 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC29.75■■■□□ 2.35
Limch1Q3UH68 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
Limch1Q3UH68 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Limch1Q3UH68 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC29.73■■■□□ 2.35
Limch1Q3UH68 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Limch1Q3UH68 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC29.72■■■□□ 2.35
Limch1Q3UH68 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
Limch1Q3UH68 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Limch1Q3UH68 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
Limch1Q3UH68 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC29.69■■■□□ 2.34
Limch1Q3UH68 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC29.69■■■□□ 2.34
Limch1Q3UH68 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC29.67■■■□□ 2.34
Limch1Q3UH68 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC29.66■■■□□ 2.34
Limch1Q3UH68 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Limch1Q3UH68 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
Limch1Q3UH68 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC29.63■■■□□ 2.33
Limch1Q3UH68 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Limch1Q3UH68 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
Limch1Q3UH68 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
Limch1Q3UH68 Zxda-201ENSMUST00000117281 2621 ntBASIC29.58■■■□□ 2.33
Limch1Q3UH68 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Limch1Q3UH68 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
Limch1Q3UH68 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Limch1Q3UH68 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Limch1Q3UH68 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
Limch1Q3UH68 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Limch1Q3UH68 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
Limch1Q3UH68 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC29.52■■■□□ 2.32
Limch1Q3UH68 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Limch1Q3UH68 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.51■■■□□ 2.31
Limch1Q3UH68 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC29.51■■■□□ 2.31
Limch1Q3UH68 Gm9905-201ENSMUST00000065740 1845 ntBASIC29.5■■■□□ 2.31
Limch1Q3UH68 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Limch1Q3UH68 Gm6206-201ENSMUST00000133472 2199 ntBASIC29.49■■■□□ 2.31
Limch1Q3UH68 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
Limch1Q3UH68 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Limch1Q3UH68 Gm6345-201ENSMUST00000180378 1691 ntBASIC29.47■■■□□ 2.31
Limch1Q3UH68 Gm45855-201ENSMUST00000212546 880 ntBASIC29.47■■■□□ 2.31
Limch1Q3UH68 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Limch1Q3UH68 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Limch1Q3UH68 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
Limch1Q3UH68 Gm30346-201ENSMUST00000218641 1699 ntBASIC29.44■■■□□ 2.3
Limch1Q3UH68 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
Limch1Q3UH68 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
Limch1Q3UH68 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
Limch1Q3UH68 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
Limch1Q3UH68 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Limch1Q3UH68 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
Limch1Q3UH68 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Limch1Q3UH68 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.39■■■□□ 2.3
Limch1Q3UH68 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.29
Limch1Q3UH68 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Limch1Q3UH68 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Limch1Q3UH68 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Limch1Q3UH68 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Limch1Q3UH68 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Limch1Q3UH68 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Limch1Q3UH68 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
Limch1Q3UH68 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC29.34■■■□□ 2.29
Limch1Q3UH68 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Limch1Q3UH68 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Limch1Q3UH68 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
Limch1Q3UH68 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC29.31■■■□□ 2.28
Limch1Q3UH68 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Limch1Q3UH68 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
Limch1Q3UH68 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Limch1Q3UH68 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Limch1Q3UH68 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC29.27■■■□□ 2.28
Limch1Q3UH68 Gm9397-201ENSMUST00000200125 605 ntBASIC29.27■■■□□ 2.28
Limch1Q3UH68 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Limch1Q3UH68 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
Limch1Q3UH68 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Limch1Q3UH68 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 50.9 ms