Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
Limch1Q3UH68 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC29.85■■■□□ 2.37
Limch1Q3UH68 Rab22a-202ENSMUST00000109110 849 ntTSL 5 BASIC29.85■■■□□ 2.37
Limch1Q3UH68 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
Limch1Q3UH68 Eif2ak3-204ENSMUST00000162950 927 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
Limch1Q3UH68 Tdp2-203ENSMUST00000223804 1136 ntBASIC29.84■■■□□ 2.37
Limch1Q3UH68 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC29.83■■■□□ 2.37
Limch1Q3UH68 Tpst1-201ENSMUST00000040721 2050 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
Limch1Q3UH68 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.82■■■□□ 2.36
Limch1Q3UH68 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
Limch1Q3UH68 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC29.79■■■□□ 2.36
Limch1Q3UH68 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC29.78■■■□□ 2.36
Limch1Q3UH68 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
Limch1Q3UH68 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
Limch1Q3UH68 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC29.77■■■□□ 2.36
Limch1Q3UH68 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC29.76■■■□□ 2.35
Limch1Q3UH68 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
Limch1Q3UH68 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
Limch1Q3UH68 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC29.75■■■□□ 2.35
Limch1Q3UH68 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
Limch1Q3UH68 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
Limch1Q3UH68 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC29.73■■■□□ 2.35
Limch1Q3UH68 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
Limch1Q3UH68 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC29.72■■■□□ 2.35
Limch1Q3UH68 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC29.72■■■□□ 2.35
Limch1Q3UH68 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC29.7■■■□□ 2.35
Limch1Q3UH68 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC29.7■■■□□ 2.34
Limch1Q3UH68 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC29.69■■■□□ 2.34
Limch1Q3UH68 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC29.69■■■□□ 2.34
Limch1Q3UH68 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Kcnmb4os2-201ENSMUST00000080943 1571 ntTSL 5 BASIC29.69■■■□□ 2.34
Limch1Q3UH68 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC29.67■■■□□ 2.34
Limch1Q3UH68 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC29.66■■■□□ 2.34
Limch1Q3UH68 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC29.64■■■□□ 2.34
Limch1Q3UH68 Gm5601-202ENSMUST00000207161 1437 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
Limch1Q3UH68 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC29.63■■■□□ 2.33
Limch1Q3UH68 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
Limch1Q3UH68 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC29.6■■■□□ 2.33
Limch1Q3UH68 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC29.59■■■□□ 2.33
Limch1Q3UH68 Zxda-201ENSMUST00000117281 2621 ntBASIC29.58■■■□□ 2.33
Limch1Q3UH68 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC29.57■■■□□ 2.32
Limch1Q3UH68 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC29.56■■■□□ 2.32
Limch1Q3UH68 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC29.55■■■□□ 2.32
Limch1Q3UH68 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC29.54■■■□□ 2.32
Limch1Q3UH68 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC29.54■■■□□ 2.32
Limch1Q3UH68 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC29.53■■■□□ 2.32
Limch1Q3UH68 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC29.53■■■□□ 2.32
Limch1Q3UH68 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC29.52■■■□□ 2.32
Limch1Q3UH68 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC29.51■■■□□ 2.31
Limch1Q3UH68 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC29.51■■■□□ 2.31
Limch1Q3UH68 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC29.51■■■□□ 2.31
Limch1Q3UH68 Gm9905-201ENSMUST00000065740 1845 ntBASIC29.5■■■□□ 2.31
Limch1Q3UH68 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
Limch1Q3UH68 Gm6206-201ENSMUST00000133472 2199 ntBASIC29.49■■■□□ 2.31
Limch1Q3UH68 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC29.48■■■□□ 2.31
Limch1Q3UH68 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
Limch1Q3UH68 Gm6345-201ENSMUST00000180378 1691 ntBASIC29.47■■■□□ 2.31
Limch1Q3UH68 Gm45855-201ENSMUST00000212546 880 ntBASIC29.47■■■□□ 2.31
Limch1Q3UH68 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
Limch1Q3UH68 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC29.46■■■□□ 2.31
Limch1Q3UH68 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC29.45■■■□□ 2.3
Limch1Q3UH68 Gm30346-201ENSMUST00000218641 1699 ntBASIC29.44■■■□□ 2.3
Limch1Q3UH68 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
Limch1Q3UH68 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC29.43■■■□□ 2.3
Limch1Q3UH68 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC29.42■■■□□ 2.3
Limch1Q3UH68 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
Limch1Q3UH68 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
Limch1Q3UH68 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC29.4■■■□□ 2.3
Limch1Q3UH68 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
Limch1Q3UH68 Gm43445-201ENSMUST00000198564 2091 ntBASIC29.39■■■□□ 2.3
Limch1Q3UH68 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC29.39■■■□□ 2.29
Limch1Q3UH68 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Limch1Q3UH68 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Limch1Q3UH68 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC29.38■■■□□ 2.29
Limch1Q3UH68 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
Limch1Q3UH68 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC29.35■■■□□ 2.29
Limch1Q3UH68 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC29.35■■■□□ 2.29
Limch1Q3UH68 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC29.34■■■□□ 2.29
Limch1Q3UH68 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC29.34■■■□□ 2.29
Limch1Q3UH68 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
Limch1Q3UH68 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC29.33■■■□□ 2.29
Limch1Q3UH68 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC29.32■■■□□ 2.28
Limch1Q3UH68 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC29.31■■■□□ 2.28
Limch1Q3UH68 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC29.31■■■□□ 2.28
Limch1Q3UH68 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Limch1Q3UH68 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC29.3■■■□□ 2.28
Limch1Q3UH68 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
Limch1Q3UH68 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.28
Limch1Q3UH68 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC29.27■■■□□ 2.28
Limch1Q3UH68 Gm9397-201ENSMUST00000200125 605 ntBASIC29.27■■■□□ 2.28
Limch1Q3UH68 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Limch1Q3UH68 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC29.26■■■□□ 2.27
Limch1Q3UH68 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
Limch1Q3UH68 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
Retrieved 100 of 76,532 protein–RNA pairs in 13.7 ms