Protein–RNA interactions for Protein: P41245

Mmp9, Matrix metalloproteinase-9, mousemouse

Predictions only

Length 730 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Mmp9P41245 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Mmp9P41245 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Mmp9P41245 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.98■□□□□ 0.95
Mmp9P41245 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Mmp9P41245 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Mmp9P41245 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Mmp9P41245 Fcho2-204ENSMUST00000179563 1586 ntTSL 5 BASIC20.95■□□□□ 0.94
Mmp9P41245 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Mmp9P41245 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Mmp9P41245 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Mmp9P41245 Fezf2-202ENSMUST00000224023 1917 ntBASIC20.94■□□□□ 0.94
Mmp9P41245 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Mmp9P41245 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Mmp9P41245 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Mmp9P41245 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Mmp9P41245 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC20.91■□□□□ 0.94
Mmp9P41245 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Mmp9P41245 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Mmp9P41245 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Mmp9P41245 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Mmp9P41245 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC20.88■□□□□ 0.93
Mmp9P41245 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC20.88■□□□□ 0.93
Mmp9P41245 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Mmp9P41245 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Mmp9P41245 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Mmp9P41245 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Mmp9P41245 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Mmp9P41245 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC20.85■□□□□ 0.93
Mmp9P41245 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Mmp9P41245 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Mmp9P41245 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Mmp9P41245 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp9P41245 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp9P41245 Aes-201ENSMUST00000002518 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp9P41245 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp9P41245 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
Mmp9P41245 Uhrf2-202ENSMUST00000112552 1464 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
Mmp9P41245 Mipep-204ENSMUST00000225043 1548 ntBASIC20.83■□□□□ 0.92
Mmp9P41245 Hnrnpd-203ENSMUST00000112939 1670 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.92
Mmp9P41245 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
Mmp9P41245 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC20.82■□□□□ 0.92
Mmp9P41245 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
Mmp9P41245 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp9P41245 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp9P41245 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp9P41245 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
Mmp9P41245 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
Mmp9P41245 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.79■□□□□ 0.92
Mmp9P41245 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
Mmp9P41245 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Mmp9P41245 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Mmp9P41245 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Mmp9P41245 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Mmp9P41245 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Mmp9P41245 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
Mmp9P41245 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Mmp9P41245 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Mmp9P41245 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
Mmp9P41245 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Mmp9P41245 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC20.7■□□□□ 0.9
Mmp9P41245 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Mmp9P41245 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Mmp9P41245 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Mmp9P41245 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Mmp9P41245 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Mmp9P41245 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
Mmp9P41245 AL845457.1-201ENSMUST00000197244 68 ntBASIC20.65■□□□□ 0.9
Mmp9P41245 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Mmp9P41245 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Mmp9P41245 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Mmp9P41245 Gm6345-201ENSMUST00000180378 1691 ntBASIC20.64■□□□□ 0.9
Mmp9P41245 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Mmp9P41245 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC20.63■□□□□ 0.89
Mmp9P41245 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Mmp9P41245 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Mmp9P41245 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.61■□□□□ 0.89
Mmp9P41245 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Mmp9P41245 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Mmp9P41245 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
Mmp9P41245 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC20.59■□□□□ 0.89
Mmp9P41245 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Mmp9P41245 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Mmp9P41245 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Mmp9P41245 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Mmp9P41245 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC20.57■□□□□ 0.88
Mmp9P41245 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Mmp9P41245 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Mmp9P41245 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Mmp9P41245 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Mmp9P41245 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Mmp9P41245 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Mmp9P41245 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Mmp9P41245 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Mmp9P41245 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Mmp9P41245 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Mmp9P41245 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Mmp9P41245 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
Mmp9P41245 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Mmp9P41245 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC20.49■□□□□ 0.87
Mmp9P41245 Gm17082-201ENSMUST00000166043 1091 ntBASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms