Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm24804-201ENSMUST00000174982 85 ntBASIC20.02■□□□□ 0.8
Cdx1P18111 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.01■□□□□ 0.79
Cdx1P18111 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC20.01■□□□□ 0.79
Cdx1P18111 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Cdx1P18111 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdx1P18111 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Cdx1P18111 Amer2-203ENSMUST00000225247 2662 ntBASIC20.01■□□□□ 0.79
Cdx1P18111 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdx1P18111 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Cdx1P18111 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
Cdx1P18111 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
Cdx1P18111 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdx1P18111 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdx1P18111 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Cdx1P18111 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
Cdx1P18111 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cdx1P18111 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Cdx1P18111 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.93■□□□□ 0.78
Cdx1P18111 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx1P18111 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx1P18111 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Cdx1P18111 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Cdx1P18111 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx1P18111 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Cdx1P18111 Mypop-203ENSMUST00000131087 1951 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Cdx1P18111 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Cdx1P18111 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC19.9■□□□□ 0.78
Cdx1P18111 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cdx1P18111 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cdx1P18111 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cdx1P18111 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC19.87■□□□□ 0.77
Cdx1P18111 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Cdx1P18111 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx1P18111 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cdx1P18111 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cdx1P18111 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Cdx1P18111 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
Cdx1P18111 Ric1-206ENSMUST00000162184 2157 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
Cdx1P18111 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx1P18111 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cdx1P18111 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
Cdx1P18111 Mafa-201ENSMUST00000062002 1080 ntAPPRIS P1 BASIC19.78■□□□□ 0.76
Cdx1P18111 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx1P18111 Bod1-201ENSMUST00000058060 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx1P18111 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Cdx1P18111 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx1P18111 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx1P18111 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx1P18111 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Cdx1P18111 Chmp4b-201ENSMUST00000044277 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx1P18111 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Cdx1P18111 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Cdx1P18111 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Cdx1P18111 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Cdx1P18111 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Cdx1P18111 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Cdx1P18111 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx1P18111 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx1P18111 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Cdx1P18111 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cdx1P18111 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx1P18111 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx1P18111 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC19.68■□□□□ 0.74
Cdx1P18111 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.68■□□□□ 0.74
Cdx1P18111 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx1P18111 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Cdx1P18111 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Cdx1P18111 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Cdx1P18111 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.67■□□□□ 0.74
Cdx1P18111 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdx1P18111 Tmem59-201ENSMUST00000030361 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cdx1P18111 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx1P18111 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.66■□□□□ 0.74
Cdx1P18111 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx1P18111 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cdx1P18111 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx1P18111 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx1P18111 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cdx1P18111 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Cdx1P18111 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx1P18111 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx1P18111 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Cdx1P18111 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cdx1P18111 Ebag9-203ENSMUST00000227691 1945 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cdx1P18111 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cdx1P18111 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cdx1P18111 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Cdx1P18111 Fkbp8-204ENSMUST00000119698 1799 ntAPPRIS P4 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdx1P18111 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cdx1P18111 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cdx1P18111 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.59■□□□□ 0.73
Cdx1P18111 Rnf130-201ENSMUST00000054684 1415 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Cdx1P18111 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.58■□□□□ 0.73
Cdx1P18111 Zfp131-205ENSMUST00000223812 663 ntBASIC19.58■□□□□ 0.72
Cdx1P18111 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Cdx1P18111 Gm20634-201ENSMUST00000090779 2956 ntBASIC19.57■□□□□ 0.72
Cdx1P18111 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cdx1P18111 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Cdx1P18111 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cdx1P18111 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 33.5 ms