Protein–RNA interactions for Protein: O35988

Sdc4, Syndecan-4, mousemouse

Known RBP Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc4O35988 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Sdc4O35988 Ildr2-207ENSMUST00000195557 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
Sdc4O35988 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC26.41■■□□□ 1.82
Sdc4O35988 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC26.4■■□□□ 1.82
Sdc4O35988 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Sdc4O35988 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Sdc4O35988 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Sdc4O35988 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC26.39■■□□□ 1.82
Sdc4O35988 Gm2415-204ENSMUST00000190235 2004 ntBASIC26.39■■□□□ 1.81
Sdc4O35988 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC26.39■■□□□ 1.81
Sdc4O35988 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Sdc4O35988 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Sdc4O35988 Tmco6-201ENSMUST00000007046 1817 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Sdc4O35988 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC26.36■■□□□ 1.81
Sdc4O35988 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC26.35■■□□□ 1.81
Sdc4O35988 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
Sdc4O35988 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
Sdc4O35988 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC26.33■■□□□ 1.81
Sdc4O35988 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
Sdc4O35988 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Sdc4O35988 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Sdc4O35988 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Sdc4O35988 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
Sdc4O35988 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Sdc4O35988 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Sdc4O35988 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
Sdc4O35988 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC26.26■■□□□ 1.79
Sdc4O35988 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Sdc4O35988 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Sdc4O35988 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Sdc4O35988 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Sdc4O35988 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.25■■□□□ 1.79
Sdc4O35988 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Sdc4O35988 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
Sdc4O35988 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
Sdc4O35988 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC26.24■■□□□ 1.79
Sdc4O35988 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC26.24■■□□□ 1.79
Sdc4O35988 Gm6658-202ENSMUST00000209493 1885 ntBASIC26.23■■□□□ 1.79
Sdc4O35988 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
Sdc4O35988 Gm24970-201ENSMUST00000175582 82 ntBASIC26.21■■□□□ 1.79
Sdc4O35988 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Sdc4O35988 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
Sdc4O35988 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC26.2■■□□□ 1.79
Sdc4O35988 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.79
Sdc4O35988 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
Sdc4O35988 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC26.18■■□□□ 1.78
Sdc4O35988 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Sdc4O35988 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
Sdc4O35988 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
Sdc4O35988 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
Sdc4O35988 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
Sdc4O35988 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Sdc4O35988 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
Sdc4O35988 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
Sdc4O35988 Ccm2-201ENSMUST00000000388 1858 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
Sdc4O35988 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC26.1■■□□□ 1.77
Sdc4O35988 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Sdc4O35988 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
Sdc4O35988 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
Sdc4O35988 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Sdc4O35988 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Sdc4O35988 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Sdc4O35988 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Sdc4O35988 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
Sdc4O35988 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC26.03■■□□□ 1.76
Sdc4O35988 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Sdc4O35988 Gm43863-201ENSMUST00000203822 1192 ntBASIC26.03■■□□□ 1.76
Sdc4O35988 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC26.01■■□□□ 1.75
Sdc4O35988 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
Sdc4O35988 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
Sdc4O35988 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC25.99■■□□□ 1.75
Sdc4O35988 Gm30346-201ENSMUST00000218641 1699 ntBASIC25.99■■□□□ 1.75
Sdc4O35988 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
Sdc4O35988 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Sdc4O35988 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
Sdc4O35988 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC25.96■■□□□ 1.75
Sdc4O35988 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Sdc4O35988 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Sdc4O35988 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Sdc4O35988 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.95■■□□□ 1.74
Sdc4O35988 Nrg3-202ENSMUST00000168810 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC25.94■■□□□ 1.74
Sdc4O35988 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Sdc4O35988 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC25.93■■□□□ 1.74
Sdc4O35988 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.92■■□□□ 1.74
Sdc4O35988 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC25.92■■□□□ 1.74
Sdc4O35988 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC25.92■■□□□ 1.74
Sdc4O35988 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC25.91■■□□□ 1.74
Sdc4O35988 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Sdc4O35988 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC25.9■■□□□ 1.74
Sdc4O35988 AC157572.2-201ENSMUST00000226970 908 ntBASIC25.88■■□□□ 1.73
Sdc4O35988 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC25.88■■□□□ 1.73
Sdc4O35988 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC25.88■■□□□ 1.73
Sdc4O35988 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Sdc4O35988 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC25.86■■□□□ 1.73
Sdc4O35988 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC25.85■■□□□ 1.73
Sdc4O35988 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
Sdc4O35988 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC25.84■■□□□ 1.73
Sdc4O35988 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
Sdc4O35988 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
Sdc4O35988 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC25.8■■□□□ 1.72
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms