Protein–RNA interactions for Protein: J3QMG8

Trav13d-3, T cell receptor alpha variable 13D-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav13d-3J3QMG8 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC22,44■■□□□ 1,18
Trav13d-3J3QMG8 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC22,44■■□□□ 1,18
Trav13d-3J3QMG8 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC22,44■■□□□ 1,18
Trav13d-3J3QMG8 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC22,43■■□□□ 1,18
Trav13d-3J3QMG8 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC22,42■■□□□ 1,18
Trav13d-3J3QMG8 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22,42■■□□□ 1,18
Trav13d-3J3QMG8 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC22,42■■□□□ 1,18
Trav13d-3J3QMG8 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22,42■■□□□ 1,18
Trav13d-3J3QMG8 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC22,41■■□□□ 1,18
Trav13d-3J3QMG8 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC22,41■■□□□ 1,18
Trav13d-3J3QMG8 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC22,41■■□□□ 1,18
Trav13d-3J3QMG8 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC22,4■■□□□ 1,18
Trav13d-3J3QMG8 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC22,4■■□□□ 1,18
Trav13d-3J3QMG8 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC22,39■■□□□ 1,18
Trav13d-3J3QMG8 Trp53rkb-202ENSMUST00000065753 1375 ntTSL 1 (best) BASIC22,38■■□□□ 1,17
Trav13d-3J3QMG8 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC22,38■■□□□ 1,17
Trav13d-3J3QMG8 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC22,38■■□□□ 1,17
Trav13d-3J3QMG8 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC22,37■■□□□ 1,17
Trav13d-3J3QMG8 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC22,37■■□□□ 1,17
Trav13d-3J3QMG8 Galnt10-202ENSMUST00000108846 1745 ntTSL 1 (best) BASIC22,37■■□□□ 1,17
Trav13d-3J3QMG8 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC22,35■■□□□ 1,17
Trav13d-3J3QMG8 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC22,34■■□□□ 1,17
Trav13d-3J3QMG8 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC22,34■■□□□ 1,17
Trav13d-3J3QMG8 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC22,33■■□□□ 1,16
Trav13d-3J3QMG8 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC22,32■■□□□ 1,16
Trav13d-3J3QMG8 Gm30346-201ENSMUST00000218641 1699 ntBASIC22,32■■□□□ 1,16
Trav13d-3J3QMG8 Gm16148-201ENSMUST00000119653 893 ntBASIC22,31■■□□□ 1,16
Trav13d-3J3QMG8 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC22,31■■□□□ 1,16
Trav13d-3J3QMG8 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC22,31■■□□□ 1,16
Trav13d-3J3QMG8 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC22,3■■□□□ 1,16
Trav13d-3J3QMG8 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC22,28■■□□□ 1,16
Trav13d-3J3QMG8 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC22,27■■□□□ 1,16
Trav13d-3J3QMG8 Pth1r-202ENSMUST00000166716 2219 ntAPPRIS P1 TSL 1 (best) BASIC22,26■■□□□ 1,15
Trav13d-3J3QMG8 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC22,26■■□□□ 1,15
Trav13d-3J3QMG8 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC22,25■■□□□ 1,15
Trav13d-3J3QMG8 Raly-201ENSMUST00000029120 1802 ntAPPRIS ALT2 TSL 5 BASIC22,25■■□□□ 1,15
Trav13d-3J3QMG8 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC22,24■■□□□ 1,15
Trav13d-3J3QMG8 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC22,24■■□□□ 1,15
Trav13d-3J3QMG8 Gm6345-201ENSMUST00000180378 1691 ntBASIC22,23■■□□□ 1,15
Trav13d-3J3QMG8 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC22,23■■□□□ 1,15
Trav13d-3J3QMG8 Zxda-201ENSMUST00000117281 2621 ntBASIC22,23■■□□□ 1,15
Trav13d-3J3QMG8 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC22,22■■□□□ 1,15
Trav13d-3J3QMG8 Mfsd5-201ENSMUST00000051341 1742 ntAPPRIS P1 TSL 1 (best) BASIC22,22■■□□□ 1,15
Trav13d-3J3QMG8 Upp2-202ENSMUST00000071543 2150 ntTSL 1 (best) BASIC22,22■■□□□ 1,15
Trav13d-3J3QMG8 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC22,21■■□□□ 1,15
Trav13d-3J3QMG8 Pfdn2-202ENSMUST00000135941 1735 ntAPPRIS P1 TSL 1 (best) BASIC22,19■■□□□ 1,14
Trav13d-3J3QMG8 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC22,18■■□□□ 1,14
Trav13d-3J3QMG8 Rnf220-212ENSMUST00000221654 1949 ntTSL 1 (best) BASIC22,18■■□□□ 1,14
Trav13d-3J3QMG8 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC22,18■■□□□ 1,14
Trav13d-3J3QMG8 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC22,17■■□□□ 1,14
Trav13d-3J3QMG8 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC22,17■■□□□ 1,14
Trav13d-3J3QMG8 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC22,16■■□□□ 1,14
Trav13d-3J3QMG8 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC22,16■■□□□ 1,14
Trav13d-3J3QMG8 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC22,15■■□□□ 1,14
Trav13d-3J3QMG8 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC22,14■■□□□ 1,13
Trav13d-3J3QMG8 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC22,13■■□□□ 1,13
Trav13d-3J3QMG8 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC22,13■■□□□ 1,13
Trav13d-3J3QMG8 Gm6206-201ENSMUST00000133472 2199 ntBASIC22,12■■□□□ 1,13
Trav13d-3J3QMG8 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC22,12■■□□□ 1,13
Trav13d-3J3QMG8 1700028N14Rik-201ENSMUST00000139621 747 ntTSL 1 (best) BASIC22,12■■□□□ 1,13
Trav13d-3J3QMG8 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC22,12■■□□□ 1,13
Trav13d-3J3QMG8 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC22,12■■□□□ 1,13
Trav13d-3J3QMG8 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC22,11■■□□□ 1,13
Trav13d-3J3QMG8 2210008F06Rik-201ENSMUST00000180805 1082 ntTSL 1 (best) BASIC22,11■■□□□ 1,13
Trav13d-3J3QMG8 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC22,11■■□□□ 1,13
Trav13d-3J3QMG8 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC22,11■■□□□ 1,13
Trav13d-3J3QMG8 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC22,1■■□□□ 1,13
Trav13d-3J3QMG8 Gm9905-201ENSMUST00000065740 1845 ntBASIC22,09■■□□□ 1,13
Trav13d-3J3QMG8 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC22,08■■□□□ 1,13
Trav13d-3J3QMG8 Gm43445-201ENSMUST00000198564 2091 ntBASIC22,08■■□□□ 1,12
Trav13d-3J3QMG8 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC22,07■■□□□ 1,12
Trav13d-3J3QMG8 Fam60a-203ENSMUST00000111562 906 ntAPPRIS P1 TSL 3 BASIC22,07■■□□□ 1,12
Trav13d-3J3QMG8 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC22,06■■□□□ 1,12
Trav13d-3J3QMG8 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC22,06■■□□□ 1,12
Trav13d-3J3QMG8 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC22,06■■□□□ 1,12
Trav13d-3J3QMG8 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC22,05■■□□□ 1,12
Trav13d-3J3QMG8 Srsf9-201ENSMUST00000031513 1162 ntAPPRIS P1 TSL 1 (best) BASIC22,05■■□□□ 1,12
Trav13d-3J3QMG8 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC22,03■■□□□ 1,12
Trav13d-3J3QMG8 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC22,03■■□□□ 1,12
Trav13d-3J3QMG8 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC22,03■■□□□ 1,12
Trav13d-3J3QMG8 Ccdc122-202ENSMUST00000095625 1195 ntAPPRIS ALT2 TSL 1 (best) BASIC22,03■■□□□ 1,12
Trav13d-3J3QMG8 Tmeff1-202ENSMUST00000123476 1224 ntAPPRIS P1 TSL 1 (best) BASIC22,02■■□□□ 1,12
Trav13d-3J3QMG8 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC22,02■■□□□ 1,12
Trav13d-3J3QMG8 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1,11
Trav13d-3J3QMG8 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC22■■□□□ 1,11
Trav13d-3J3QMG8 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21,99■■□□□ 1,11
Trav13d-3J3QMG8 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21,98■■□□□ 1,11
Trav13d-3J3QMG8 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21,98■■□□□ 1,11
Trav13d-3J3QMG8 Cldnd1-201ENSMUST00000023426 2147 ntAPPRIS P1 TSL 1 (best) BASIC21,97■■□□□ 1,11
Trav13d-3J3QMG8 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC21,97■■□□□ 1,11
Trav13d-3J3QMG8 CT030161.2-201ENSMUST00000218666 735 ntTSL 3 BASIC21,97■■□□□ 1,11
Trav13d-3J3QMG8 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC21,97■■□□□ 1,11
Trav13d-3J3QMG8 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21,96■■□□□ 1,11
Trav13d-3J3QMG8 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC21,96■■□□□ 1,11
Trav13d-3J3QMG8 Gm10762-201ENSMUST00000099385 1133 ntAPPRIS P1 BASIC21,96■■□□□ 1,11
Trav13d-3J3QMG8 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21,95■■□□□ 1,1
Trav13d-3J3QMG8 Ildr2-205ENSMUST00000193860 2320 ntTSL 1 (best) BASIC21,94■■□□□ 1,1
Trav13d-3J3QMG8 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21,94■■□□□ 1,1
Trav13d-3J3QMG8 Zfp787-201ENSMUST00000094870 1897 ntAPPRIS P1 TSL 1 (best) BASIC21,94■■□□□ 1,1
Trav13d-3J3QMG8 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC21,92■■□□□ 1,1
Retrieved 100 of 76,532 protein–RNA pairs in 21,2 ms