Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
Chd3B1AR17 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
Chd3B1AR17 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Chd3B1AR17 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
Chd3B1AR17 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC25.4■■□□□ 1.66
Chd3B1AR17 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC25.4■■□□□ 1.66
Chd3B1AR17 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC25.4■■□□□ 1.66
Chd3B1AR17 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC25.4■■□□□ 1.66
Chd3B1AR17 Fbll1-201ENSMUST00000160726 1503 ntAPPRIS P1 BASIC25.39■■□□□ 1.65
Chd3B1AR17 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC25.38■■□□□ 1.65
Chd3B1AR17 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
Chd3B1AR17 Gm6658-202ENSMUST00000209493 1885 ntBASIC25.36■■□□□ 1.65
Chd3B1AR17 Gm9397-201ENSMUST00000200125 605 ntBASIC25.35■■□□□ 1.65
Chd3B1AR17 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC25.34■■□□□ 1.65
Chd3B1AR17 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
Chd3B1AR17 Lactb-201ENSMUST00000034929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.34■■□□□ 1.65
Chd3B1AR17 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC25.33■■□□□ 1.64
Chd3B1AR17 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Chd3B1AR17 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
Chd3B1AR17 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
Chd3B1AR17 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC25.31■■□□□ 1.64
Chd3B1AR17 Fbxo6-201ENSMUST00000030858 1346 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
Chd3B1AR17 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC25.29■■□□□ 1.64
Chd3B1AR17 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
Chd3B1AR17 Hoxd8-201ENSMUST00000019749 2634 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
Chd3B1AR17 Plpp2-201ENSMUST00000063879 1654 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
Chd3B1AR17 Paip1-203ENSMUST00000126957 1731 ntTSL 5 BASIC25.27■■□□□ 1.64
Chd3B1AR17 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
Chd3B1AR17 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC25.24■■□□□ 1.63
Chd3B1AR17 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
Chd3B1AR17 Gm30346-201ENSMUST00000218641 1699 ntBASIC25.22■■□□□ 1.63
Chd3B1AR17 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
Chd3B1AR17 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
Chd3B1AR17 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC25.21■■□□□ 1.63
Chd3B1AR17 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC25.19■■□□□ 1.62
Chd3B1AR17 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Chd3B1AR17 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC25.19■■□□□ 1.62
Chd3B1AR17 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
Chd3B1AR17 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Chd3B1AR17 Gm5814-201ENSMUST00000177586 378 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
Chd3B1AR17 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
Chd3B1AR17 Gm7334-201ENSMUST00000061681 1356 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
Chd3B1AR17 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC25.14■■□□□ 1.62
Chd3B1AR17 4932443I19Rik-201ENSMUST00000166277 799 ntAPPRIS P2 TSL 1 (best) BASIC25.14■■□□□ 1.62
Chd3B1AR17 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC25.14■■□□□ 1.62
Chd3B1AR17 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Chd3B1AR17 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.61
Chd3B1AR17 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Chd3B1AR17 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Chd3B1AR17 Hmx1-201ENSMUST00000087674 1526 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Chd3B1AR17 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC25.12■■□□□ 1.61
Chd3B1AR17 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Chd3B1AR17 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC25.09■■□□□ 1.61
Chd3B1AR17 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Chd3B1AR17 Ywhaq-202ENSMUST00000103002 2110 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Chd3B1AR17 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
Chd3B1AR17 Gm24970-201ENSMUST00000175582 82 ntBASIC25.06■■□□□ 1.6
Chd3B1AR17 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Chd3B1AR17 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC25.06■■□□□ 1.6
Chd3B1AR17 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC25.05■■□□□ 1.6
Chd3B1AR17 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Chd3B1AR17 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Chd3B1AR17 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Chd3B1AR17 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Chd3B1AR17 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Chd3B1AR17 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC25.02■■□□□ 1.6
Chd3B1AR17 AC157572.2-201ENSMUST00000226970 908 ntBASIC25.01■■□□□ 1.59
Chd3B1AR17 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Chd3B1AR17 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC25.01■■□□□ 1.59
Chd3B1AR17 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC25■■□□□ 1.59
Chd3B1AR17 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Chd3B1AR17 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Chd3B1AR17 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
Chd3B1AR17 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Chd3B1AR17 Ythdf1-202ENSMUST00000108876 2272 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
Chd3B1AR17 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Chd3B1AR17 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC24.97■■□□□ 1.59
Chd3B1AR17 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
Chd3B1AR17 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC24.96■■□□□ 1.59
Chd3B1AR17 Ldb1-206ENSMUST00000152946 2108 ntAPPRIS ALT1 TSL 5 BASIC24.96■■□□□ 1.59
Chd3B1AR17 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC24.95■■□□□ 1.59
Chd3B1AR17 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC24.95■■□□□ 1.58
Chd3B1AR17 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC24.94■■□□□ 1.58
Chd3B1AR17 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
Chd3B1AR17 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Chd3B1AR17 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Chd3B1AR17 Mrps7-201ENSMUST00000058109 1962 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
Chd3B1AR17 Gm43863-201ENSMUST00000203822 1192 ntBASIC24.92■■□□□ 1.58
Chd3B1AR17 Cebpb-201ENSMUST00000070642 1504 ntAPPRIS P1 BASIC24.92■■□□□ 1.58
Chd3B1AR17 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
Chd3B1AR17 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
Chd3B1AR17 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Chd3B1AR17 Cetn4-202ENSMUST00000075537 762 ntTSL 3 BASIC24.89■■□□□ 1.57
Chd3B1AR17 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
Chd3B1AR17 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
Chd3B1AR17 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Chd3B1AR17 Pitpna-205ENSMUST00000179445 1665 ntAPPRIS ALT1 TSL 5 BASIC24.84■■□□□ 1.57
Chd3B1AR17 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Chd3B1AR17 Rheb-201ENSMUST00000030787 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Chd3B1AR17 Dapk3-202ENSMUST00000178422 1730 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Retrieved 100 of 76,532 protein–RNA pairs in 61.7 ms