Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Chd6A3KFM7 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chd6A3KFM7 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Chd6A3KFM7 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Chd6A3KFM7 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Chd6A3KFM7 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21.8■■□□□ 1.08
Chd6A3KFM7 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Chd6A3KFM7 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Chd6A3KFM7 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
Chd6A3KFM7 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chd6A3KFM7 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Chd6A3KFM7 Gm11599-201ENSMUST00000118720 878 ntBASIC21.74■■□□□ 1.07
Chd6A3KFM7 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Chd6A3KFM7 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Chd6A3KFM7 Gm42809-201ENSMUST00000198429 1138 ntBASIC21.72■■□□□ 1.07
Chd6A3KFM7 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
Chd6A3KFM7 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC21.7■■□□□ 1.06
Chd6A3KFM7 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
Chd6A3KFM7 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Chd6A3KFM7 Casp9-202ENSMUST00000097805 1498 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Chd6A3KFM7 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21.66■■□□□ 1.06
Chd6A3KFM7 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.66■■□□□ 1.06
Chd6A3KFM7 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Chd6A3KFM7 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
Chd6A3KFM7 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chd6A3KFM7 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
Chd6A3KFM7 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
Chd6A3KFM7 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Chd6A3KFM7 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.61■■□□□ 1.05
Chd6A3KFM7 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21.6■■□□□ 1.05
Chd6A3KFM7 Gm22567-201ENSMUST00000175542 342 ntBASIC21.6■■□□□ 1.05
Chd6A3KFM7 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chd6A3KFM7 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC21.59■■□□□ 1.05
Chd6A3KFM7 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Chd6A3KFM7 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC21.58■■□□□ 1.05
Chd6A3KFM7 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC21.58■■□□□ 1.05
Chd6A3KFM7 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Chd6A3KFM7 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Chd6A3KFM7 Zfp131-207ENSMUST00000224946 1783 ntBASIC21.56■■□□□ 1.04
Chd6A3KFM7 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chd6A3KFM7 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
Chd6A3KFM7 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Chd6A3KFM7 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
Chd6A3KFM7 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Chd6A3KFM7 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Chd6A3KFM7 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Chd6A3KFM7 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chd6A3KFM7 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC21.51■■□□□ 1.03
Chd6A3KFM7 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
Chd6A3KFM7 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Chd6A3KFM7 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Chd6A3KFM7 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
Chd6A3KFM7 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chd6A3KFM7 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Chd6A3KFM7 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
Chd6A3KFM7 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC21.47■■□□□ 1.03
Chd6A3KFM7 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
Chd6A3KFM7 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
Chd6A3KFM7 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Chd6A3KFM7 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.43■■□□□ 1.02
Chd6A3KFM7 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Chd6A3KFM7 E330040D14Rik-201ENSMUST00000192299 1374 ntBASIC21.43■■□□□ 1.02
Chd6A3KFM7 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Chd6A3KFM7 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC21.42■■□□□ 1.02
Chd6A3KFM7 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.42■■□□□ 1.02
Chd6A3KFM7 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Chd6A3KFM7 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Chd6A3KFM7 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chd6A3KFM7 Gnai2-202ENSMUST00000192615 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Chd6A3KFM7 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd6A3KFM7 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC21.4■■□□□ 1.02
Chd6A3KFM7 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd6A3KFM7 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
Chd6A3KFM7 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Chd6A3KFM7 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Chd6A3KFM7 Mipep-204ENSMUST00000225043 1548 ntBASIC21.39■■□□□ 1.01
Chd6A3KFM7 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
Chd6A3KFM7 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC21.38■■□□□ 1.01
Chd6A3KFM7 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Chd6A3KFM7 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Chd6A3KFM7 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC21.36■■□□□ 1.01
Chd6A3KFM7 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Chd6A3KFM7 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC21.36■■□□□ 1.01
Chd6A3KFM7 Lrrc1-204ENSMUST00000183734 2113 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Chd6A3KFM7 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Chd6A3KFM7 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Chd6A3KFM7 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Chd6A3KFM7 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Chd6A3KFM7 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Chd6A3KFM7 Jdp2-203ENSMUST00000177587 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Chd6A3KFM7 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC21.31■■□□□ 1
Chd6A3KFM7 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC21.3■■□□□ 1
Chd6A3KFM7 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Chd6A3KFM7 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.29■■□□□ 1
Chd6A3KFM7 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
Chd6A3KFM7 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chd6A3KFM7 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC21.28■■□□□ 1
Chd6A3KFM7 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Chd6A3KFM7 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC21.28■■□□□ 1
Chd6A3KFM7 Nkain2-201ENSMUST00000092602 558 ntBASIC21.28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 52.5 ms