Protein–RNA interactions for Protein: A2AX52

Col6a4, Collagen alpha-4(VI) chain, mousemouse

Predictions only

Length 2,309 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4A2AX52 Rnf215-201ENSMUST00000003677 1874 ntAPPRIS P1 TSL 1 (best) BASIC21,86■■□□□ 1,09
Col6a4A2AX52 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21,85■■□□□ 1,09
Col6a4A2AX52 Gm6821-201ENSMUST00000107540 542 ntBASIC21,85■■□□□ 1,09
Col6a4A2AX52 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21,84■■□□□ 1,09
Col6a4A2AX52 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC21,83■■□□□ 1,08
Col6a4A2AX52 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC21,83■■□□□ 1,08
Col6a4A2AX52 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC21,83■■□□□ 1,08
Col6a4A2AX52 Lmo2-201ENSMUST00000111139 1434 ntTSL 5 BASIC21,81■■□□□ 1,08
Col6a4A2AX52 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21,81■■□□□ 1,08
Col6a4A2AX52 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21,81■■□□□ 1,08
Col6a4A2AX52 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21,81■■□□□ 1,08
Col6a4A2AX52 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC21,81■■□□□ 1,08
Col6a4A2AX52 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC21,8■■□□□ 1,08
Col6a4A2AX52 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC21,8■■□□□ 1,08
Col6a4A2AX52 Bok-205ENSMUST00000201863 883 ntAPPRIS P1 TSL 5 BASIC21,79■■□□□ 1,08
Col6a4A2AX52 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC21,79■■□□□ 1,08
Col6a4A2AX52 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21,78■■□□□ 1,08
Col6a4A2AX52 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC21,78■■□□□ 1,08
Col6a4A2AX52 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC21,78■■□□□ 1,08
Col6a4A2AX52 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC21,78■■□□□ 1,08
Col6a4A2AX52 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC21,77■■□□□ 1,08
Col6a4A2AX52 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21,77■■□□□ 1,08
Col6a4A2AX52 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC21,75■■□□□ 1,07
Col6a4A2AX52 Gm42809-201ENSMUST00000198429 1138 ntBASIC21,75■■□□□ 1,07
Col6a4A2AX52 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC21,72■■□□□ 1,07
Col6a4A2AX52 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC21,72■■□□□ 1,07
Col6a4A2AX52 Calm3-201ENSMUST00000019514 2290 ntAPPRIS P1 TSL 1 (best) BASIC21,7■■□□□ 1,06
Col6a4A2AX52 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC21,69■■□□□ 1,06
Col6a4A2AX52 Spata1-201ENSMUST00000029839 1920 ntAPPRIS P1 TSL 1 (best) BASIC21,67■■□□□ 1,06
Col6a4A2AX52 Kras-207ENSMUST00000203147 817 ntTSL 5 BASIC21,67■■□□□ 1,06
Col6a4A2AX52 Hnrnpd-202ENSMUST00000072750 1537 ntAPPRIS ALT2 TSL 3 BASIC21,66■■□□□ 1,06
Col6a4A2AX52 Ube2m-201ENSMUST00000005714 1472 ntAPPRIS P1 TSL 1 (best) BASIC21,65■■□□□ 1,06
Col6a4A2AX52 Gm43863-201ENSMUST00000203822 1192 ntBASIC21,64■■□□□ 1,06
Col6a4A2AX52 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21,64■■□□□ 1,06
Col6a4A2AX52 6530409C15Rik-202ENSMUST00000143551 1573 ntTSL 1 (best) BASIC21,63■■□□□ 1,05
Col6a4A2AX52 AC157572.2-201ENSMUST00000226970 908 ntBASIC21,63■■□□□ 1,05
Col6a4A2AX52 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21,62■■□□□ 1,05
Col6a4A2AX52 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC21,61■■□□□ 1,05
Col6a4A2AX52 Bok-201ENSMUST00000027499 1468 ntAPPRIS P1 TSL 1 (best) BASIC21,61■■□□□ 1,05
Col6a4A2AX52 Tnfsfm13-202ENSMUST00000174159 1470 ntAPPRIS ALT2 TSL 2 BASIC21,6■■□□□ 1,05
Col6a4A2AX52 Gm7432-201ENSMUST00000210343 879 ntBASIC21,6■■□□□ 1,05
Col6a4A2AX52 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC21,6■■□□□ 1,05
Col6a4A2AX52 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21,58■■□□□ 1,04
Col6a4A2AX52 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC21,57■■□□□ 1,04
Col6a4A2AX52 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21,57■■□□□ 1,04
Col6a4A2AX52 Phlda1-201ENSMUST00000164773 1949 ntAPPRIS P1 TSL 1 (best) BASIC21,55■■□□□ 1,04
Col6a4A2AX52 Sept11-208ENSMUST00000202308 1792 ntAPPRIS ALT1 TSL 5 BASIC21,55■■□□□ 1,04
Col6a4A2AX52 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC21,55■■□□□ 1,04
Col6a4A2AX52 Tbcel-204ENSMUST00000128959 1535 ntAPPRIS P1 TSL 5 BASIC21,53■■□□□ 1,04
Col6a4A2AX52 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC21,53■■□□□ 1,04
Col6a4A2AX52 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21,53■■□□□ 1,04
Col6a4A2AX52 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC21,52■■□□□ 1,04
Col6a4A2AX52 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC21,51■■□□□ 1,03
Col6a4A2AX52 Tprgl-201ENSMUST00000030896 1724 ntAPPRIS P1 TSL 1 (best) BASIC21,5■■□□□ 1,03
Col6a4A2AX52 Frs3-201ENSMUST00000113296 2144 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Col6a4A2AX52 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC21,49■■□□□ 1,03
Col6a4A2AX52 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC21,49■■□□□ 1,03
Col6a4A2AX52 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC21,49■■□□□ 1,03
Col6a4A2AX52 Azin2-201ENSMUST00000030581 2063 ntAPPRIS P1 TSL 1 (best) BASIC21,48■■□□□ 1,03
Col6a4A2AX52 Mapk3-202ENSMUST00000057669 1800 ntAPPRIS P2 TSL 1 (best) BASIC21,47■■□□□ 1,03
Col6a4A2AX52 Akt1s1-202ENSMUST00000107880 1757 ntAPPRIS P3 TSL 1 (best) BASIC21,47■■□□□ 1,03
Col6a4A2AX52 Mocs3-201ENSMUST00000099071 1973 ntAPPRIS P1 BASIC21,47■■□□□ 1,03
Col6a4A2AX52 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC21,47■■□□□ 1,03
Col6a4A2AX52 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC21,47■■□□□ 1,03
Col6a4A2AX52 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC21,45■■□□□ 1,02
Col6a4A2AX52 Tlx1-201ENSMUST00000026236 2065 ntAPPRIS P1 TSL 1 (best) BASIC21,44■■□□□ 1,02
Col6a4A2AX52 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC21,44■■□□□ 1,02
Col6a4A2AX52 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC21,43■■□□□ 1,02
Col6a4A2AX52 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21,43■■□□□ 1,02
Col6a4A2AX52 Tcte2-204ENSMUST00000130033 1462 ntAPPRIS ALT2 TSL 1 (best) BASIC21,42■■□□□ 1,02
Col6a4A2AX52 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21,41■■□□□ 1,02
Col6a4A2AX52 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC21,41■■□□□ 1,02
Col6a4A2AX52 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC21,41■■□□□ 1,02
Col6a4A2AX52 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC21,39■■□□□ 1,02
Col6a4A2AX52 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC21,39■■□□□ 1,01
Col6a4A2AX52 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC21,39■■□□□ 1,01
Col6a4A2AX52 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21,37■■□□□ 1,01
Col6a4A2AX52 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21,37■■□□□ 1,01
Col6a4A2AX52 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC21,36■■□□□ 1,01
Col6a4A2AX52 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC21,36■■□□□ 1,01
Col6a4A2AX52 Pwwp2a-202ENSMUST00000094294 1814 ntTSL 5 BASIC21,36■■□□□ 1,01
Col6a4A2AX52 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC21,35■■□□□ 1,01
Col6a4A2AX52 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC21,35■■□□□ 1,01
Col6a4A2AX52 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC21,34■■□□□ 1,01
Col6a4A2AX52 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC21,34■■□□□ 1,01
Col6a4A2AX52 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21,33■■□□□ 1,01
Col6a4A2AX52 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21,33■■□□□ 1,01
Col6a4A2AX52 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC21,33■■□□□ 1
Col6a4A2AX52 E2f4-201ENSMUST00000015003 1993 ntAPPRIS P1 TSL 1 (best) BASIC21,33■■□□□ 1
Col6a4A2AX52 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC21,31■■□□□ 1
Col6a4A2AX52 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC21,31■■□□□ 1
Col6a4A2AX52 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC21,3■■□□□ 1
Col6a4A2AX52 Triobp-206ENSMUST00000130663 1660 ntAPPRIS ALT2 TSL 5 BASIC21,3■■□□□ 1
Col6a4A2AX52 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC21,3■■□□□ 1
Col6a4A2AX52 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC21,3■■□□□ 1
Col6a4A2AX52 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC21,29■■□□□ 1
Col6a4A2AX52 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21,29■■□□□ 1
Col6a4A2AX52 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC21,29■■□□□ 1
Col6a4A2AX52 Fam136a-201ENSMUST00000071492 1643 ntAPPRIS P1 TSL 1 (best) BASIC21,29■■□□□ 1
Col6a4A2AX52 Rbfox2-201ENSMUST00000048145 1720 ntTSL 1 (best) BASIC21,28■■□□□ 1
Retrieved 100 of 76,532 protein–RNA pairs in 42,2 ms