Protein–RNA interactions for Protein: A2AN08

Ubr4, E3 ubiquitin-protein ligase UBR4, mousemouse

Predictions only

Length 5,180 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr4A2AN08 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ubr4A2AN08 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ubr4A2AN08 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
Ubr4A2AN08 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
Ubr4A2AN08 Gm10524-201ENSMUST00000181931 1893 ntBASIC14.36□□□□□ -0.11
Ubr4A2AN08 Gm42809-201ENSMUST00000198429 1138 ntBASIC14.35□□□□□ -0.11
Ubr4A2AN08 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Ubr4A2AN08 Syt7-201ENSMUST00000073899 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Ubr4A2AN08 E130304I02Rik-202ENSMUST00000187873 696 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Ubr4A2AN08 Psd-208ENSMUST00000224556 2034 ntBASIC14.32□□□□□ -0.12
Ubr4A2AN08 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Ubr4A2AN08 Nt5dc2-204ENSMUST00000227096 1848 ntAPPRIS P5 BASIC14.31□□□□□ -0.12
Ubr4A2AN08 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC14.29□□□□□ -0.12
Ubr4A2AN08 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Ubr4A2AN08 Gm11599-201ENSMUST00000118720 878 ntBASIC14.28□□□□□ -0.12
Ubr4A2AN08 Hoxa4-201ENSMUST00000101395 1594 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Ubr4A2AN08 Ybx2-205ENSMUST00000149194 1235 ntTSL 5 BASIC14.27□□□□□ -0.13
Ubr4A2AN08 Crlf1-201ENSMUST00000008032 1644 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ubr4A2AN08 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Ubr4A2AN08 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
Ubr4A2AN08 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC14.26□□□□□ -0.13
Ubr4A2AN08 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubr4A2AN08 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubr4A2AN08 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Ubr4A2AN08 Gm42596-201ENSMUST00000196305 1958 ntBASIC14.25□□□□□ -0.13
Ubr4A2AN08 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ubr4A2AN08 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Ubr4A2AN08 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC14.23□□□□□ -0.13
Ubr4A2AN08 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Ubr4A2AN08 CT025624.2-201ENSMUST00000223609 1909 ntBASIC14.23□□□□□ -0.13
Ubr4A2AN08 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
Ubr4A2AN08 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Ubr4A2AN08 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Ubr4A2AN08 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubr4A2AN08 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Ubr4A2AN08 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Ubr4A2AN08 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Ubr4A2AN08 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC14.19□□□□□ -0.14
Ubr4A2AN08 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
Ubr4A2AN08 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC14.18□□□□□ -0.14
Ubr4A2AN08 Gm43863-201ENSMUST00000203822 1192 ntBASIC14.17□□□□□ -0.14
Ubr4A2AN08 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC14.17□□□□□ -0.14
Ubr4A2AN08 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Vegfa-212ENSMUST00000214739 1107 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC14.16□□□□□ -0.14
Ubr4A2AN08 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Mir155hg-202ENSMUST00000185662 1362 ntTSL 5 BASIC14.16□□□□□ -0.14
Ubr4A2AN08 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
Ubr4A2AN08 Pi16-201ENSMUST00000114699 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ubr4A2AN08 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.14
Ubr4A2AN08 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ubr4A2AN08 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ubr4A2AN08 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Ubr4A2AN08 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ubr4A2AN08 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ubr4A2AN08 Trp53i13-201ENSMUST00000060417 1463 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ubr4A2AN08 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Ubr4A2AN08 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC14.12□□□□□ -0.15
Ubr4A2AN08 Eif4e2-204ENSMUST00000113231 1119 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
Ubr4A2AN08 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ubr4A2AN08 Nkain2-201ENSMUST00000092602 558 ntBASIC14.11□□□□□ -0.15
Ubr4A2AN08 Unc119-203ENSMUST00000108295 1371 ntTSL 3 BASIC14.11□□□□□ -0.15
Ubr4A2AN08 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Ubr4A2AN08 Abhd17a-201ENSMUST00000003436 1468 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
Ubr4A2AN08 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC14.1□□□□□ -0.15
Ubr4A2AN08 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
Ubr4A2AN08 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
Ubr4A2AN08 Emx1-201ENSMUST00000045942 1561 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.15
Ubr4A2AN08 Dctpp1-201ENSMUST00000035276 676 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
Ubr4A2AN08 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
Ubr4A2AN08 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ubr4A2AN08 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
Ubr4A2AN08 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
Ubr4A2AN08 Abhd17a-204ENSMUST00000191440 1529 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
Ubr4A2AN08 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC14.05□□□□□ -0.16
Ubr4A2AN08 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ubr4A2AN08 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
Ubr4A2AN08 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
Ubr4A2AN08 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC14.05□□□□□ -0.16
Ubr4A2AN08 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Ubr4A2AN08 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Ubr4A2AN08 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Ubr4A2AN08 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC14.03□□□□□ -0.16
Ubr4A2AN08 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubr4A2AN08 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubr4A2AN08 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Ubr4A2AN08 Nemp1-202ENSMUST00000118612 1522 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
Ubr4A2AN08 Dhrs13-203ENSMUST00000122342 1791 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Ubr4A2AN08 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC14.01□□□□□ -0.17
Ubr4A2AN08 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC14□□□□□ -0.17
Ubr4A2AN08 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC14□□□□□ -0.17
Ubr4A2AN08 AC157572.2-201ENSMUST00000226970 908 ntBASIC14□□□□□ -0.17
Ubr4A2AN08 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
Ubr4A2AN08 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
Ubr4A2AN08 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
Ubr4A2AN08 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC13.98□□□□□ -0.17
Ubr4A2AN08 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 13.1 ms