Protein–RNA interactions for Protein: A0A0B4J1G7

Trbv1, T cell receptor beta, variable 1 (Fragment), mousemouse

Predictions only

Length 116 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv1A0A0B4J1G7 Clk2-203ENSMUST00000121931 2112 ntAPPRIS ALT1 TSL 5 BASIC19.64■□□□□ 0.73
Trbv1A0A0B4J1G7 AL845457.1-201ENSMUST00000197244 68 ntBASIC19.63■□□□□ 0.73
Trbv1A0A0B4J1G7 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Trbv1A0A0B4J1G7 Fcho2-203ENSMUST00000109403 1523 ntTSL 5 BASIC19.62■□□□□ 0.73
Trbv1A0A0B4J1G7 Kansl2-201ENSMUST00000023727 2311 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Trbv1A0A0B4J1G7 Hdgf-201ENSMUST00000005017 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Trbv1A0A0B4J1G7 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv1A0A0B4J1G7 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Trbv1A0A0B4J1G7 Mpp6-203ENSMUST00000166318 2222 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv1A0A0B4J1G7 Mbd3-204ENSMUST00000105349 1566 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Trbv1A0A0B4J1G7 Gm17082-201ENSMUST00000166043 1091 ntBASIC19.59■□□□□ 0.73
Trbv1A0A0B4J1G7 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Trbv1A0A0B4J1G7 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
Trbv1A0A0B4J1G7 Raly-204ENSMUST00000116389 1759 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Trbv1A0A0B4J1G7 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Trbv1A0A0B4J1G7 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
Trbv1A0A0B4J1G7 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv1A0A0B4J1G7 Gm27322-201ENSMUST00000184007 104 ntBASIC19.56■□□□□ 0.72
Trbv1A0A0B4J1G7 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trbv1A0A0B4J1G7 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Trbv1A0A0B4J1G7 Grk2-210ENSMUST00000171123 1439 ntTSL 5 BASIC19.55■□□□□ 0.72
Trbv1A0A0B4J1G7 Gm26115-201ENSMUST00000175605 87 ntBASIC19.55■□□□□ 0.72
Trbv1A0A0B4J1G7 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trbv1A0A0B4J1G7 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trbv1A0A0B4J1G7 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv1A0A0B4J1G7 Nectin3-203ENSMUST00000096052 1746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trbv1A0A0B4J1G7 Ring1-201ENSMUST00000025183 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv1A0A0B4J1G7 Ilk-201ENSMUST00000033182 1795 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Trbv1A0A0B4J1G7 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
Trbv1A0A0B4J1G7 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
Trbv1A0A0B4J1G7 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv1A0A0B4J1G7 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv1A0A0B4J1G7 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv1A0A0B4J1G7 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
Trbv1A0A0B4J1G7 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trbv1A0A0B4J1G7 Kcna7-201ENSMUST00000107774 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Trbv1A0A0B4J1G7 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC19.48■□□□□ 0.71
Trbv1A0A0B4J1G7 Shf-201ENSMUST00000048635 1431 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trbv1A0A0B4J1G7 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trbv1A0A0B4J1G7 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv1A0A0B4J1G7 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC19.47■□□□□ 0.71
Trbv1A0A0B4J1G7 Gltp-201ENSMUST00000012028 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trbv1A0A0B4J1G7 Mapk14-205ENSMUST00000114758 1581 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trbv1A0A0B4J1G7 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trbv1A0A0B4J1G7 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trbv1A0A0B4J1G7 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trbv1A0A0B4J1G7 Gm8109-201ENSMUST00000194076 746 ntBASIC19.44■□□□□ 0.7
Trbv1A0A0B4J1G7 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trbv1A0A0B4J1G7 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC19.42■□□□□ 0.7
Trbv1A0A0B4J1G7 Slc25a28-201ENSMUST00000046038 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv1A0A0B4J1G7 AC153890.1-201ENSMUST00000220021 2469 ntBASIC19.41■□□□□ 0.7
Trbv1A0A0B4J1G7 AC166822.3-201ENSMUST00000227394 661 ntBASIC19.41■□□□□ 0.7
Trbv1A0A0B4J1G7 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trbv1A0A0B4J1G7 Mipep-204ENSMUST00000225043 1548 ntBASIC19.41■□□□□ 0.7
Trbv1A0A0B4J1G7 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv1A0A0B4J1G7 Ube2q2-202ENSMUST00000121677 1680 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Trbv1A0A0B4J1G7 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trbv1A0A0B4J1G7 Suds3-202ENSMUST00000166397 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trbv1A0A0B4J1G7 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC19.38■□□□□ 0.69
Trbv1A0A0B4J1G7 Terf2-201ENSMUST00000068388 1915 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trbv1A0A0B4J1G7 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trbv1A0A0B4J1G7 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv1A0A0B4J1G7 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trbv1A0A0B4J1G7 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trbv1A0A0B4J1G7 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC19.35■□□□□ 0.69
Trbv1A0A0B4J1G7 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Trbv1A0A0B4J1G7 Gm12184-201ENSMUST00000104959 1310 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
Trbv1A0A0B4J1G7 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trbv1A0A0B4J1G7 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trbv1A0A0B4J1G7 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trbv1A0A0B4J1G7 Dtnb-203ENSMUST00000164578 2355 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trbv1A0A0B4J1G7 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trbv1A0A0B4J1G7 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trbv1A0A0B4J1G7 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trbv1A0A0B4J1G7 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
Trbv1A0A0B4J1G7 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv1A0A0B4J1G7 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv1A0A0B4J1G7 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv1A0A0B4J1G7 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trbv1A0A0B4J1G7 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv1A0A0B4J1G7 Fcnaos-201ENSMUST00000127642 1351 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Trbv1A0A0B4J1G7 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
Trbv1A0A0B4J1G7 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv1A0A0B4J1G7 Cenpv-201ENSMUST00000018653 1032 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv1A0A0B4J1G7 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Trbv1A0A0B4J1G7 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Caap1-201ENSMUST00000030313 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Dda1-209ENSMUST00000147642 1865 ntTSL 2 BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Susd4-202ENSMUST00000153348 1898 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC19.22■□□□□ 0.67
Trbv1A0A0B4J1G7 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv1A0A0B4J1G7 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv1A0A0B4J1G7 Ccz1-201ENSMUST00000031621 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trbv1A0A0B4J1G7 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC19.21■□□□□ 0.66
Trbv1A0A0B4J1G7 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv1A0A0B4J1G7 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trbv1A0A0B4J1G7 B4galt7-202ENSMUST00000100764 2195 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Trbv1A0A0B4J1G7 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 12.7 ms