Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Gm12821-201ENSMUST00000120022 600 ntBASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim11Q99PQ2 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Nkain1-201ENSMUST00000105993 1202 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Wdr70-203ENSMUST00000227371 1130 ntBASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim11Q99PQ2 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 AC126028.2-201ENSMUST00000228100 1833 ntBASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim11Q99PQ2 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim11Q99PQ2 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Dap3-201ENSMUST00000090938 4760 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Ssbp1-203ENSMUST00000117411 933 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.78■■□□□ 1.08
Trim11Q99PQ2 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Paip2-204ENSMUST00000115736 857 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Smad6-203ENSMUST00000179458 273 ntBASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim11Q99PQ2 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Gm8493-201ENSMUST00000196881 489 ntBASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
Trim11Q99PQ2 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Gm11421-201ENSMUST00000122124 294 ntBASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Gm27454-201ENSMUST00000185090 204 ntBASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Gm43173-201ENSMUST00000202246 593 ntBASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Gtsf1-201ENSMUST00000023129 819 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
Trim11Q99PQ2 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 16.9 ms