Protein–RNA interactions for Protein: Q99MA9

Nkx6-1, Homeobox protein Nkx-6.1, mousemouse

Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx6-1Q99MA9 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
Nkx6-1Q99MA9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nkx6-1Q99MA9 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nkx6-1Q99MA9 Carm1-203ENSMUST00000115395 3152 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nkx6-1Q99MA9 Nipa1-201ENSMUST00000052204 3183 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nkx6-1Q99MA9 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Nkx6-1Q99MA9 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 AC154266.1-201ENSMUST00000223190 503 ntBASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Nkx6-1Q99MA9 Setd4-202ENSMUST00000113951 1826 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Gm13042-201ENSMUST00000119244 1955 ntBASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
Nkx6-1Q99MA9 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Nkx6-1Q99MA9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
Nkx6-1Q99MA9 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Hey1-201ENSMUST00000042412 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Gm5643-201ENSMUST00000117081 966 ntBASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Ankrd54-201ENSMUST00000040676 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
Nkx6-1Q99MA9 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 AC131586.2-201ENSMUST00000228370 1512 ntBASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC18■□□□□ 0.47
Nkx6-1Q99MA9 Nkx2-2-201ENSMUST00000067075 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Notumos-201ENSMUST00000151998 2659 ntBASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Gm29994-201ENSMUST00000195495 1193 ntBASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 AA386476-201ENSMUST00000098781 1665 ntBASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Actr5-201ENSMUST00000045644 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Nkx6-1Q99MA9 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Stk32c-201ENSMUST00000016125 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Gm38160-201ENSMUST00000193090 2499 ntBASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Nkx6-1Q99MA9 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Inhbb-201ENSMUST00000038765 4255 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.97■□□□□ 0.47
Nkx6-1Q99MA9 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Nkx6-1Q99MA9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.96■□□□□ 0.46
Nkx6-1Q99MA9 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nkx6-1Q99MA9 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nkx6-1Q99MA9 Spock1-204ENSMUST00000186271 2005 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nkx6-1Q99MA9 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Nkx6-1Q99MA9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 21.6 ms