Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC21.19■□□□□ 0.98
YBX1P67809 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
YBX1P67809 OR2I1P-207ENST00000453522 948 ntBASIC21.19■□□□□ 0.98
YBX1P67809 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.19■□□□□ 0.98
YBX1P67809 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
YBX1P67809 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
YBX1P67809 ESRRAP2-201ENST00000418437 1549 ntBASIC21.19■□□□□ 0.98
YBX1P67809 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
YBX1P67809 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
YBX1P67809 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
YBX1P67809 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
YBX1P67809 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
YBX1P67809 MIR939-201ENST00000401314 82 ntBASIC21.18■□□□□ 0.98
YBX1P67809 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.18■□□□□ 0.98
YBX1P67809 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
YBX1P67809 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
YBX1P67809 AC087742.1-201ENST00000575880 1738 ntBASIC21.18■□□□□ 0.98
YBX1P67809 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.18■□□□□ 0.98
YBX1P67809 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
YBX1P67809 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.17■□□□□ 0.98
YBX1P67809 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
YBX1P67809 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
YBX1P67809 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
YBX1P67809 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.17■□□□□ 0.98
YBX1P67809 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
YBX1P67809 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
YBX1P67809 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
YBX1P67809 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.17■□□□□ 0.98
YBX1P67809 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.17■□□□□ 0.98
YBX1P67809 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
YBX1P67809 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
YBX1P67809 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
YBX1P67809 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.16■□□□□ 0.98
YBX1P67809 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 AC099791.1-201ENST00000416440 715 ntBASIC21.16■□□□□ 0.98
YBX1P67809 BX842568.3-201ENST00000418104 571 ntBASIC21.16■□□□□ 0.98
YBX1P67809 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC21.16■□□□□ 0.98
YBX1P67809 AC233992.3-201ENST00000607491 485 ntBASIC21.16■□□□□ 0.98
YBX1P67809 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
YBX1P67809 LINC01960-201ENST00000563759 1884 ntBASIC21.15■□□□□ 0.98
YBX1P67809 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
YBX1P67809 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
YBX1P67809 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC21.15■□□□□ 0.98
YBX1P67809 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
YBX1P67809 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.15■□□□□ 0.98
YBX1P67809 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.15■□□□□ 0.98
YBX1P67809 AC142381.2-201ENST00000566120 298 ntBASIC21.15■□□□□ 0.98
YBX1P67809 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
YBX1P67809 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.14■□□□□ 0.98
YBX1P67809 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
YBX1P67809 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
YBX1P67809 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
YBX1P67809 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
YBX1P67809 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
YBX1P67809 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.14■□□□□ 0.97
YBX1P67809 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
YBX1P67809 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.14■□□□□ 0.97
YBX1P67809 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
YBX1P67809 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.14■□□□□ 0.97
YBX1P67809 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
YBX1P67809 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
YBX1P67809 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
YBX1P67809 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC21.13■□□□□ 0.97
YBX1P67809 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
YBX1P67809 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
YBX1P67809 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
YBX1P67809 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.13■□□□□ 0.97
YBX1P67809 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.13■□□□□ 0.97
YBX1P67809 STOX2-205ENST00000513034 807 ntTSL 3 BASIC21.13■□□□□ 0.97
YBX1P67809 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
YBX1P67809 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
YBX1P67809 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
YBX1P67809 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.12■□□□□ 0.97
YBX1P67809 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
YBX1P67809 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC21.12■□□□□ 0.97
YBX1P67809 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
YBX1P67809 AL031602.1-201ENST00000633169 911 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms