Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.05■□□□□ 0.96
COL5A1P20908 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.05■□□□□ 0.96
COL5A1P20908 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
COL5A1P20908 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.05■□□□□ 0.96
COL5A1P20908 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A1P20908 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A1P20908 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
COL5A1P20908 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.04■□□□□ 0.96
COL5A1P20908 AC066615.1-201ENST00000640911 628 ntBASIC21.04■□□□□ 0.96
COL5A1P20908 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC21.04■□□□□ 0.96
COL5A1P20908 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.04■□□□□ 0.96
COL5A1P20908 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
COL5A1P20908 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A1P20908 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A1P20908 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A1P20908 AC007322.1-201ENST00000426983 750 ntBASIC21.03■□□□□ 0.96
COL5A1P20908 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.03■□□□□ 0.96
COL5A1P20908 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A1P20908 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
COL5A1P20908 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A1P20908 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A1P20908 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A1P20908 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
COL5A1P20908 AL353803.4-201ENST00000565882 1934 ntBASIC21.02■□□□□ 0.96
COL5A1P20908 AC005181.1-201ENST00000604782 1256 ntBASIC21.02■□□□□ 0.96
COL5A1P20908 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
COL5A1P20908 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.02■□□□□ 0.95
COL5A1P20908 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A1P20908 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.01■□□□□ 0.95
COL5A1P20908 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
COL5A1P20908 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.01■□□□□ 0.95
COL5A1P20908 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.01■□□□□ 0.95
COL5A1P20908 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A1P20908 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
COL5A1P20908 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.01■□□□□ 0.95
COL5A1P20908 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A1P20908 MIR4651-201ENST00000582622 73 ntBASIC21.01■□□□□ 0.95
COL5A1P20908 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A1P20908 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
COL5A1P20908 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COL5A1P20908 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
COL5A1P20908 AC073210.2-201ENST00000430369 194 ntBASIC21.01■□□□□ 0.95
COL5A1P20908 AC069152.1-201ENST00000438030 544 ntBASIC21.01■□□□□ 0.95
COL5A1P20908 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC21.01■□□□□ 0.95
COL5A1P20908 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.01■□□□□ 0.95
COL5A1P20908 AC083906.2-201ENST00000511578 360 ntBASIC21.01■□□□□ 0.95
COL5A1P20908 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.01■□□□□ 0.95
COL5A1P20908 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
COL5A1P20908 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
COL5A1P20908 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL5A1P20908 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC21■□□□□ 0.95
COL5A1P20908 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL5A1P20908 KRT18P20-201ENST00000548986 1279 ntBASIC21■□□□□ 0.95
COL5A1P20908 AL138781.1-201ENST00000566567 1274 ntBASIC21■□□□□ 0.95
COL5A1P20908 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
COL5A1P20908 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21■□□□□ 0.95
COL5A1P20908 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 H19-210ENST00000439725 1929 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A1P20908 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
COL5A1P20908 TSPY20P-201ENST00000450910 630 ntBASIC20.99■□□□□ 0.95
COL5A1P20908 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.99■□□□□ 0.95
COL5A1P20908 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A1P20908 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A1P20908 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A1P20908 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
COL5A1P20908 AF201337.1-201ENST00000520239 748 ntBASIC20.99■□□□□ 0.95
COL5A1P20908 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.99■□□□□ 0.95
COL5A1P20908 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC20.99■□□□□ 0.95
COL5A1P20908 AC098934.4-201ENST00000564127 592 ntBASIC20.99■□□□□ 0.95
COL5A1P20908 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
COL5A1P20908 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A1P20908 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
COL5A1P20908 DUSP8P3-201ENST00000399571 1760 ntBASIC20.98■□□□□ 0.95
COL5A1P20908 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A1P20908 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A1P20908 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
COL5A1P20908 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
COL5A1P20908 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.98■□□□□ 0.95
COL5A1P20908 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
COL5A1P20908 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 UQCRFS1P1-201ENST00000435169 820 ntBASIC20.97■□□□□ 0.95
COL5A1P20908 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
COL5A1P20908 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC20.97■□□□□ 0.95
COL5A1P20908 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.97■□□□□ 0.95
COL5A1P20908 AC133552.2-202ENST00000575694 574 ntBASIC20.97■□□□□ 0.95
COL5A1P20908 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
COL5A1P20908 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
COL5A1P20908 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
COL5A1P20908 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms