Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.59■□□□□ 0.89
CPSF4O95639 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CPSF4O95639 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
CPSF4O95639 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
CPSF4O95639 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CPSF4O95639 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC20.58■□□□□ 0.89
CPSF4O95639 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.58■□□□□ 0.89
CPSF4O95639 AC010542.4-201ENST00000563151 1910 ntBASIC20.58■□□□□ 0.88
CPSF4O95639 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4O95639 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.58■□□□□ 0.88
CPSF4O95639 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4O95639 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CPSF4O95639 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC20.58■□□□□ 0.88
CPSF4O95639 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.58■□□□□ 0.88
CPSF4O95639 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CPSF4O95639 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
CPSF4O95639 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.57■□□□□ 0.88
CPSF4O95639 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CPSF4O95639 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.57■□□□□ 0.88
CPSF4O95639 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4O95639 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4O95639 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CPSF4O95639 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4O95639 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4O95639 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.57■□□□□ 0.88
CPSF4O95639 AC241377.3-202ENST00000626088 1088 ntBASIC20.57■□□□□ 0.88
CPSF4O95639 AC241585.3-202ENST00000628937 1088 ntBASIC20.57■□□□□ 0.88
CPSF4O95639 AC245100.8-202ENST00000629247 1058 ntBASIC20.57■□□□□ 0.88
CPSF4O95639 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
CPSF4O95639 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4O95639 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.57■□□□□ 0.88
CPSF4O95639 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CPSF4O95639 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.57■□□□□ 0.88
CPSF4O95639 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
CPSF4O95639 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4O95639 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4O95639 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4O95639 AC006455.2-201ENST00000429931 906 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CPSF4O95639 pRNA.6-201ENST00000610482 90 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 pRNA.5-201ENST00000612139 90 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 pRNA.11-201ENST00000618423 90 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 pRNA.13-201ENST00000619112 90 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 AL035685.1-201ENST00000636663 812 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.56■□□□□ 0.88
CPSF4O95639 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.56■□□□□ 0.88
CPSF4O95639 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.56■□□□□ 0.88
CPSF4O95639 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CPSF4O95639 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.56■□□□□ 0.88
CPSF4O95639 FAM99A-202ENST00000538190 1989 ntBASIC20.55■□□□□ 0.88
CPSF4O95639 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CPSF4O95639 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.55■□□□□ 0.88
CPSF4O95639 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.55■□□□□ 0.88
CPSF4O95639 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.55■□□□□ 0.88
CPSF4O95639 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
CPSF4O95639 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.55■□□□□ 0.88
CPSF4O95639 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CPSF4O95639 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CPSF4O95639 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
CPSF4O95639 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CPSF4O95639 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.54■□□□□ 0.88
CPSF4O95639 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.54■□□□□ 0.88
CPSF4O95639 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
CPSF4O95639 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 AL356740.2-201ENST00000601559 647 ntBASIC20.54■□□□□ 0.88
CPSF4O95639 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CPSF4O95639 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC20.54■□□□□ 0.88
CPSF4O95639 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CPSF4O95639 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.53■□□□□ 0.88
CPSF4O95639 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.53■□□□□ 0.88
CPSF4O95639 AC133637.1-201ENST00000624115 1537 ntBASIC20.53■□□□□ 0.88
CPSF4O95639 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC20.53■□□□□ 0.88
CPSF4O95639 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CPSF4O95639 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms