Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 SLC16A3-209ENST00000580098 859 ntTSL 218.14■□□□□ 0.495e-7■□□□□ 11.1
CDC40O60508 AMPD2-223ENST00000531734 572 ntTSL 414.56□□□□□ -0.083e-6■□□□□ 11.1
CDC40O60508 AMPD2-209ENST00000474459 814 ntTSL 414.22□□□□□ -0.133e-6■□□□□ 11.1
CDC40O60508 AMPD2-215ENST00000526301 2354 ntTSL 1 (best)12.8□□□□□ -0.363e-6■□□□□ 11.1
CDC40O60508 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC12.68□□□□□ -0.383e-6■□□□□ 11.1
CDC40O60508 AMPD2-202ENST00000342115 3728 ntTSL 1 (best) BASIC10.32□□□□□ -0.763e-6■□□□□ 11.1
CDC40O60508 ARHGEF10L-202ENST00000361221 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.28□□□□□ -0.445e-8■□□□□ 11.1
CDC40O60508 ARHGEF10L-204ENST00000375415 4035 ntAPPRIS ALT2 TSL 1 (best) BASIC10.12□□□□□ -0.795e-8■□□□□ 11.1
CDC40O60508 SYNJ2-206ENST00000485863 810 ntTSL 317.37■□□□□ 0.376e-8■□□□□ 11
CDC40O60508 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.381e-7■□□□□ 11
CDC40O60508 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 01e-7■□□□□ 11
CDC40O60508 WWP1-210ENST00000523863 796 ntTSL 318.47■□□□□ 0.552e-6■□□□□ 11
CDC40O60508 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.32e-6■□□□□ 11
CDC40O60508 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC27.06■■□□□ 1.922e-6■□□□□ 11
CDC40O60508 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.032e-6■□□□□ 11
CDC40O60508 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC20.8■□□□□ 0.922e-6■□□□□ 11
CDC40O60508 PABPN1-206ENST00000556809 969 ntTSL 220.57■□□□□ 0.882e-6■□□□□ 11
CDC40O60508 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.042e-6■□□□□ 11
CDC40O60508 BCL2L2-PABPN1-201ENST00000553781 1241 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.522e-6■□□□□ 11
CDC40O60508 BCAR1-216ENST00000564170 552 ntTSL 419.57■□□□□ 0.721e-9■□□□□ 11
CDC40O60508 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.03■■□□□ 1.62e-9■□□□□ 11
CDC40O60508 NAP1L4-203ENST00000430811 860 ntTSL 223.63■■□□□ 1.372e-7■□□□□ 11
CDC40O60508 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC23.24■■□□□ 1.312e-9■□□□□ 11
CDC40O60508 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.74■■□□□ 1.072e-7■□□□□ 11
CDC40O60508 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.882e-7■□□□□ 11
CDC40O60508 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.812e-7■□□□□ 11
CDC40O60508 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.82e-7■□□□□ 11
CDC40O60508 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.72e-7■□□□□ 11
CDC40O60508 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.672e-9■□□□□ 11
CDC40O60508 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.92■□□□□ 0.622e-7■□□□□ 11
CDC40O60508 CREBZF-206ENST00000528561 1099 ntTSL 517.96■□□□□ 0.473e-10■□□□□ 11
CDC40O60508 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.272e-7■□□□□ 11
CDC40O60508 NAP1L4-213ENST00000526842 535 ntTSL 516.56■□□□□ 0.242e-7■□□□□ 11
CDC40O60508 CREBZF-203ENST00000525639 2850 ntTSL 516.28■□□□□ 0.23e-10■□□□□ 11
CDC40O60508 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.22■□□□□ 0.192e-9■□□□□ 11
CDC40O60508 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.172e-7■□□□□ 11
CDC40O60508 YY1AP1-218ENST00000454523 810 ntAPPRIS ALT2 TSL 215.49■□□□□ 0.072e-7■□□□□ 11
CDC40O60508 CREBZF-201ENST00000260058 1431 ntTSL 215.31■□□□□ 0.043e-10■□□□□ 11
CDC40O60508 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.032e-7■□□□□ 11
CDC40O60508 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.042e-7■□□□□ 11
CDC40O60508 YY1AP1-207ENST00000361140 2701 ntTSL 1 (best)14.77□□□□□ -0.052e-7■□□□□ 11
CDC40O60508 YY1AP1-217ENST00000443231 932 ntAPPRIS ALT2 TSL 314.75□□□□□ -0.052e-7■□□□□ 11
CDC40O60508 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.112e-7■□□□□ 11
CDC40O60508 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.142e-7■□□□□ 11
CDC40O60508 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.152e-7■□□□□ 11
CDC40O60508 YY1AP1-221ENST00000476093 1037 ntTSL 314.1□□□□□ -0.152e-7■□□□□ 11
CDC40O60508 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.172e-7■□□□□ 11
CDC40O60508 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC13.81□□□□□ -0.22e-7■□□□□ 11
CDC40O60508 DNAJC5-202ENST00000470551 5287 ntTSL 213.75□□□□□ -0.212e-7■□□□□ 11
CDC40O60508 CREBZF-202ENST00000490820 4329 ntTSL 1 (best)13.46□□□□□ -0.253e-10■□□□□ 11
CDC40O60508 CREBZF-208ENST00000531515 724 ntTSL 313.26□□□□□ -0.293e-10■□□□□ 11
CDC40O60508 CREBZF-205ENST00000527529 898 ntTSL 513.15□□□□□ -0.33e-10■□□□□ 11
CDC40O60508 YY1AP1-220ENST00000476027 927 ntTSL 312.67□□□□□ -0.382e-7■□□□□ 11
CDC40O60508 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC12.51□□□□□ -0.413e-10■□□□□ 11
CDC40O60508 YY1AP1-208ENST00000361831 2743 ntAPPRIS ALT2 TSL 1 (best) BASIC12.4□□□□□ -0.422e-7■□□□□ 11
CDC40O60508 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC12.32□□□□□ -0.443e-10■□□□□ 11
CDC40O60508 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.472e-7■□□□□ 11
CDC40O60508 CYP4F11-201ENST00000248041 2977 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.572e-7■□□□□ 11
CDC40O60508 CYP4F11-205ENST00000620614 2908 ntTSL 5 BASIC11.4□□□□□ -0.582e-7■□□□□ 11
CDC40O60508 YY1AP1-209ENST00000368330 2555 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.752e-7■□□□□ 11
CDC40O60508 YY1AP1-204ENST00000354691 2498 ntTSL 29.87□□□□□ -0.832e-7■□□□□ 11
CDC40O60508 NAP1L4-221ENST00000534372 544 ntTSL 59.74□□□□□ -0.852e-7■□□□□ 11
CDC40O60508 APOL2-201ENST00000249066 2685 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.93e-10■□□□□ 11
CDC40O60508 APOL2-209ENST00000529194 611 ntTSL 38.9□□□□□ -0.983e-10■□□□□ 11
CDC40O60508 APOL2-202ENST00000358502 2551 ntAPPRIS P2 TSL 1 (best) BASIC8.46□□□□□ -1.063e-10■□□□□ 11
CDC40O60508 YY1AP1-215ENST00000436865 2684 ntTSL 1 (best)8□□□□□ -1.132e-7■□□□□ 11
CDC40O60508 APOL2-204ENST00000454728 577 ntTSL 47.87□□□□□ -1.153e-10■□□□□ 11
CDC40O60508 YY1AP1-203ENST00000347088 2524 ntAPPRIS ALT2 TSL 1 (best) BASIC7.6□□□□□ -1.192e-7■□□□□ 11
CDC40O60508 NAP1L4-219ENST00000531291 572 ntTSL 56.95□□□□□ -1.32e-7■□□□□ 11
CDC40O60508 CREBZF-207ENST00000528889 745 ntTSL 36.7□□□□□ -1.343e-10■□□□□ 11
CDC40O60508 NAP1L4-216ENST00000528968 587 ntTSL 56.3□□□□□ -1.42e-7■□□□□ 11
CDC40O60508 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.4□□□□□ -1.543e-10■□□□□ 11
CDC40O60508 NAP1L4-217ENST00000529361 555 ntTSL 55.25□□□□□ -1.572e-7■□□□□ 11
CDC40O60508 SQLE-203ENST00000518931 554 ntTSL 44.96□□□□□ -1.622e-7■□□□□ 11
CDC40O60508 NAP1L4-202ENST00000399614 594 ntTSL 43.57□□□□□ -1.842e-7■□□□□ 11
CDC40O60508 SQLE-202ENST00000518604 743 ntTSL 22.56□□□□□ -22e-7■□□□□ 11
CDC40O60508 TRIP12-215ENST00000479037 2938 ntTSL 1 (best)12.63□□□□□ -0.395e-7■□□□□ 11
CDC40O60508 TRIP12-203ENST00000389044 6405 ntTSL 1 (best) BASIC10.2□□□□□ -0.785e-7■□□□□ 11
CDC40O60508 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.87□□□□□ -1.315e-7■□□□□ 11
CDC40O60508 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.495e-7■□□□□ 11
CDC40O60508 ACTN4-210ENST00000588618 1729 ntTSL 1 (best)20.59■□□□□ 0.894e-12■□□□□ 10.9
CDC40O60508 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.55■□□□□ 0.244e-12■□□□□ 10.9
CDC40O60508 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.174e-12■□□□□ 10.9
CDC40O60508 ACTN4-211ENST00000589528 441 ntTSL 214.32□□□□□ -0.124e-12■□□□□ 10.9
CDC40O60508 ACTN4-203ENST00000424234 1566 ntTSL 1 (best) BASIC12.65□□□□□ -0.384e-12■□□□□ 10.9
CDC40O60508 ABCC6-203ENST00000574094 2260 ntTSL 512.6□□□□□ -0.392e-6■□□□□ 10.9
CDC40O60508 ZNF692-217ENST00000495731 461 ntTSL 325.28■■□□□ 1.642e-9■□□□□ 10.9
CDC40O60508 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.162e-9■□□□□ 10.9
CDC40O60508 ZNF692-203ENST00000412341 1916 ntTSL 520.63■□□□□ 0.892e-9■□□□□ 10.9
CDC40O60508 ZNF692-226ENST00000533647 548 ntTSL 320.59■□□□□ 0.892e-9■□□□□ 10.9
CDC40O60508 ZNF692-208ENST00000470787 1544 ntTSL 220.48■□□□□ 0.872e-9■□□□□ 10.9
CDC40O60508 ZNF692-220ENST00000496411 1064 ntTSL 319.43■□□□□ 0.72e-9■□□□□ 10.9
CDC40O60508 ZNF692-211ENST00000477070 1521 ntTSL 518.98■□□□□ 0.632e-9■□□□□ 10.9
CDC40O60508 ZNF692-212ENST00000478107 1051 ntTSL 518.95■□□□□ 0.622e-9■□□□□ 10.9
CDC40O60508 ZNF692-224ENST00000530986 595 ntTSL 418.93■□□□□ 0.622e-9■□□□□ 10.9
CDC40O60508 ZNF692-219ENST00000496231 656 ntTSL 318.77■□□□□ 0.62e-9■□□□□ 10.9
CDC40O60508 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.492e-9■□□□□ 10.9
CDC40O60508 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.32e-9■□□□□ 10.9
CDC40O60508 ZNF692-215ENST00000483791 681 ntTSL 316.92■□□□□ 0.32e-9■□□□□ 10.9
CDC40O60508 ZNF692-221ENST00000497847 1031 ntTSL 216.92■□□□□ 0.32e-9■□□□□ 10.9
Retrieved 100 of 5,364 protein–RNA pairs in 36.1 ms