Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 PEMT-206ENST00000435340 960 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 AC092171.4-201ENST00000609130 632 ntBASIC22.48■■□□□ 1.19
PCDH9Q9HC56 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
PCDH9Q9HC56 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 AC006455.2-201ENST00000429931 906 ntBASIC22.47■■□□□ 1.19
PCDH9Q9HC56 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC22.47■■□□□ 1.19
PCDH9Q9HC56 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC22.46■■□□□ 1.19
PCDH9Q9HC56 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC22.45■■□□□ 1.19
PCDH9Q9HC56 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC22.45■■□□□ 1.19
PCDH9Q9HC56 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDH9Q9HC56 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC22.45■■□□□ 1.18
PCDH9Q9HC56 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDH9Q9HC56 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
PCDH9Q9HC56 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDH9Q9HC56 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PCDH9Q9HC56 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.44■■□□□ 1.18
PCDH9Q9HC56 GTSE1-AS1-202ENST00000623117 1518 ntBASIC22.44■■□□□ 1.18
PCDH9Q9HC56 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PCDH9Q9HC56 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 AC010542.4-201ENST00000563151 1910 ntBASIC22.42■■□□□ 1.18
PCDH9Q9HC56 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 DUX4L19-201ENST00000557448 1267 ntBASIC22.42■■□□□ 1.18
PCDH9Q9HC56 AL499627.2-201ENST00000606283 725 ntBASIC22.42■■□□□ 1.18
PCDH9Q9HC56 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC22.42■■□□□ 1.18
PCDH9Q9HC56 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 pRNA.6-201ENST00000610482 90 ntBASIC22.41■■□□□ 1.18
PCDH9Q9HC56 pRNA.5-201ENST00000612139 90 ntBASIC22.41■■□□□ 1.18
PCDH9Q9HC56 pRNA.11-201ENST00000618423 90 ntBASIC22.41■■□□□ 1.18
PCDH9Q9HC56 pRNA.13-201ENST00000619112 90 ntBASIC22.41■■□□□ 1.18
PCDH9Q9HC56 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 SYT6-210ENST00000641643 1587 ntBASIC22.41■■□□□ 1.18
PCDH9Q9HC56 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 EFS-203ENST00000429593 2610 ntTSL 2 BASIC22.41■■□□□ 1.18
PCDH9Q9HC56 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
PCDH9Q9HC56 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms