Protein–RNA interactions for Protein: Q99958

FOXC2, Forkhead box protein C2, humanhuman

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC2Q99958 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.4■□□□□ 0.54
FOXC2Q99958 RNA5SP413-201ENST00000516373 109 ntBASIC18.4■□□□□ 0.54
FOXC2Q99958 BRI3-207ENST00000539286 699 ntTSL 2 BASIC18.4■□□□□ 0.54
FOXC2Q99958 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC18.4■□□□□ 0.54
FOXC2Q99958 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.4■□□□□ 0.54
FOXC2Q99958 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
FOXC2Q99958 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC18.4■□□□□ 0.54
FOXC2Q99958 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.4■□□□□ 0.54
FOXC2Q99958 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
FOXC2Q99958 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
FOXC2Q99958 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
FOXC2Q99958 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
FOXC2Q99958 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.39■□□□□ 0.54
FOXC2Q99958 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXC2Q99958 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXC2Q99958 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC18.39■□□□□ 0.53
FOXC2Q99958 DLEU2-203ENST00000425586 1267 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
FOXC2Q99958 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC18.39■□□□□ 0.53
FOXC2Q99958 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
FOXC2Q99958 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
FOXC2Q99958 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXC2Q99958 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC18.38■□□□□ 0.53
FOXC2Q99958 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXC2Q99958 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
FOXC2Q99958 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXC2Q99958 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
FOXC2Q99958 AC098934.4-201ENST00000564127 592 ntBASIC18.38■□□□□ 0.53
FOXC2Q99958 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.38■□□□□ 0.53
FOXC2Q99958 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.38■□□□□ 0.53
FOXC2Q99958 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
FOXC2Q99958 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
FOXC2Q99958 RPS2P52-201ENST00000469610 820 ntBASIC18.37■□□□□ 0.53
FOXC2Q99958 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.37■□□□□ 0.53
FOXC2Q99958 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.37■□□□□ 0.53
FOXC2Q99958 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.37■□□□□ 0.53
FOXC2Q99958 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
FOXC2Q99958 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.37■□□□□ 0.53
FOXC2Q99958 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXC2Q99958 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXC2Q99958 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
FOXC2Q99958 CNN2P6-201ENST00000439038 900 ntBASIC18.36■□□□□ 0.53
FOXC2Q99958 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC18.36■□□□□ 0.53
FOXC2Q99958 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXC2Q99958 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
FOXC2Q99958 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC18.36■□□□□ 0.53
FOXC2Q99958 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FOXC2Q99958 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
FOXC2Q99958 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.35■□□□□ 0.53
FOXC2Q99958 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.35■□□□□ 0.53
FOXC2Q99958 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.35■□□□□ 0.53
FOXC2Q99958 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC18.35■□□□□ 0.53
FOXC2Q99958 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.35■□□□□ 0.53
FOXC2Q99958 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
FOXC2Q99958 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC18.35■□□□□ 0.53
FOXC2Q99958 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXC2Q99958 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
FOXC2Q99958 OXCT2P1-201ENST00000447263 1535 ntBASIC18.34■□□□□ 0.53
FOXC2Q99958 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXC2Q99958 DUSP5P2-201ENST00000426873 1033 ntBASIC18.34■□□□□ 0.53
FOXC2Q99958 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXC2Q99958 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
FOXC2Q99958 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
FOXC2Q99958 AC005224.4-201ENST00000583262 1652 ntBASIC18.34■□□□□ 0.53
FOXC2Q99958 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC18.34■□□□□ 0.53
FOXC2Q99958 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXC2Q99958 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
FOXC2Q99958 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
FOXC2Q99958 AC009237.3-201ENST00000393279 1427 ntBASIC18.33■□□□□ 0.53
FOXC2Q99958 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXC2Q99958 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
FOXC2Q99958 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC18.33■□□□□ 0.53
FOXC2Q99958 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
FOXC2Q99958 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC18.33■□□□□ 0.52
FOXC2Q99958 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
FOXC2Q99958 AP001160.3-201ENST00000601484 763 ntBASIC18.33■□□□□ 0.52
FOXC2Q99958 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC18.33■□□□□ 0.52
FOXC2Q99958 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
FOXC2Q99958 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms