Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 SMUG1P1-201ENST00000590640 811 ntBASIC26.96■■□□□ 1.91
CCDC88AQ3V6T2 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC26.95■■□□□ 1.91
CCDC88AQ3V6T2 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC26.95■■□□□ 1.91
CCDC88AQ3V6T2 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC26.95■■□□□ 1.9
CCDC88AQ3V6T2 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC88AQ3V6T2 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC26.95■■□□□ 1.9
CCDC88AQ3V6T2 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC26.95■■□□□ 1.9
CCDC88AQ3V6T2 SLC7A5P1-201ENST00000568957 537 ntBASIC26.94■■□□□ 1.9
CCDC88AQ3V6T2 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC88AQ3V6T2 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.94■■□□□ 1.9
CCDC88AQ3V6T2 POU5F1P3-201ENST00000428824 1078 ntBASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 MDK-213ENST00000617138 635 ntTSL 2 BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC26.93■■□□□ 1.9
CCDC88AQ3V6T2 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC26.92■■□□□ 1.9
CCDC88AQ3V6T2 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 AC098590.1-201ENST00000468126 897 ntBASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 MYCNOS-205ENST00000641950 531 ntBASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC26.91■■□□□ 1.9
CCDC88AQ3V6T2 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 KRT87P-202ENST00000534226 1464 ntBASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 AC007322.1-201ENST00000426983 750 ntBASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 AC073210.2-201ENST00000430369 194 ntBASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC26.9■■□□□ 1.9
CCDC88AQ3V6T2 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC26.89■■□□□ 1.9
CCDC88AQ3V6T2 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC26.89■■□□□ 1.9
CCDC88AQ3V6T2 RNA5SP413-201ENST00000516373 109 ntBASIC26.89■■□□□ 1.9
CCDC88AQ3V6T2 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC26.89■■□□□ 1.9
CCDC88AQ3V6T2 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC26.89■■□□□ 1.9
CCDC88AQ3V6T2 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC26.89■■□□□ 1.9
CCDC88AQ3V6T2 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.89■■□□□ 1.89
CCDC88AQ3V6T2 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC26.89■■□□□ 1.89
CCDC88AQ3V6T2 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC26.89■■□□□ 1.89
CCDC88AQ3V6T2 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC26.89■■□□□ 1.89
CCDC88AQ3V6T2 AC005181.1-201ENST00000604782 1256 ntBASIC26.89■■□□□ 1.89
CCDC88AQ3V6T2 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 PARP1-202ENST00000366792 553 ntTSL 3 BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 AC079140.4-201ENST00000507448 529 ntBASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.88■■□□□ 1.89
CCDC88AQ3V6T2 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 H19-210ENST00000439725 1929 ntTSL 2 BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.87■■□□□ 1.89
CCDC88AQ3V6T2 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC26.86■■□□□ 1.89
CCDC88AQ3V6T2 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 UQCRFS1P1-201ENST00000435169 820 ntBASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC26.85■■□□□ 1.89
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms