Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	COQ5	YML110C	924 nt		4.11	□□□□□ -1.75
SHP1	P34223	YBL059W	YBL059W	582 nt		4.11	□□□□□ -1.75
SHP1	P34223	RIB4	YOL143C	510 nt		4.11	□□□□□ -1.75
SHP1	P34223	YCL001W-A	YCL001W-A	462 nt		4.11	□□□□□ -1.75
SHP1	P34223	SKG6	YHR149C	2205 nt		4.11	□□□□□ -1.75
SHP1	P34223	FMP30	YPL103C	1407 nt		4.11	□□□□□ -1.75
SHP1	P34223	GZF3	YJL110C	1656 nt		4.1	□□□□□ -1.75
SHP1	P34223	YDL032W	YDL032W	312 nt		4.1	□□□□□ -1.75
SHP1	P34223	FOL2	YGR267C	732 nt		4.1	□□□□□ -1.75
SHP1	P34223	BET1	YIL004C	429 nt		4.1	□□□□□ -1.75
SHP1	P34223	YIL025C	YIL025C	375 nt		4.1	□□□□□ -1.75
SHP1	P34223	TDA5	YLR426W	981 nt		4.1	□□□□□ -1.75
SHP1	P34223	ERV41	YML067C	1059 nt		4.1	□□□□□ -1.75
SHP1	P34223	HFA1	YMR207C	6372 nt		4.1	□□□□□ -1.75
SHP1	P34223	CUZ1	YNL155W	825 nt		4.1	□□□□□ -1.75
SHP1	P34223	CYC2	YOR037W	1101 nt		4.1	□□□□□ -1.75
SHP1	P34223	SUT2	YPR009W	807 nt		4.1	□□□□□ -1.75
SHP1	P34223	PFK1	YGR240C	2964 nt		4.1	□□□□□ -1.75
SHP1	P34223	ERG5	YMR015C	1617 nt		4.1	□□□□□ -1.75
SHP1	P34223	YJL028W	YJL028W	336 nt		4.09	□□□□□ -1.75
SHP1	P34223	HYM1	YKL189W	1200 nt		4.09	□□□□□ -1.75
SHP1	P34223	YBL096C	YBL096C	309 nt		4.09	□□□□□ -1.75
SHP1	P34223	TDA3	YHR009C	1572 nt		4.09	□□□□□ -1.75
SHP1	P34223	MSA1	YOR066W	1890 nt		4.09	□□□□□ -1.76
SHP1	P34223	KIN28	YDL108W	921 nt		4.08	□□□□□ -1.76
SHP1	P34223	BUD26	YDR241W	288 nt		4.08	□□□□□ -1.76
SHP1	P34223	ARG3	YJL088W	1017 nt		4.08	□□□□□ -1.76
SHP1	P34223	HOT13	YKL084W	351 nt		4.08	□□□□□ -1.76
SHP1	P34223	DCS1	YLR270W	1053 nt		4.08	□□□□□ -1.76
SHP1	P34223	SEN1	YLR430W	6696 nt		4.08	□□□□□ -1.76
SHP1	P34223	POP8	YBL018C	402 nt		4.08	□□□□□ -1.76
SHP1	P34223	CEX1	YOR112W	2286 nt		4.08	□□□□□ -1.76
SHP1	P34223	POF1	YCL047C	777 nt		4.08	□□□□□ -1.76
SHP1	P34223	PEX34	YCL056C	435 nt		4.08	□□□□□ -1.76
SHP1	P34223	NNK1	YKL171W	2787 nt		4.08	□□□□□ -1.76
SHP1	P34223	TOG1	YER184C	2385 nt		4.07	□□□□□ -1.76
SHP1	P34223	SPO1	YNL012W	1896 nt		4.07	□□□□□ -1.76
SHP1	P34223	YOL153C	YOL153C	1746 nt		4.07	□□□□□ -1.76
SHP1	P34223	KIC1	YHR102W	3243 nt		4.07	□□□□□ -1.76
SHP1	P34223	YCR024C-B	YCR024C-B	267 nt		4.07	□□□□□ -1.76
SHP1	P34223	RPA14	YDR156W	414 nt		4.07	□□□□□ -1.76
SHP1	P34223	YJL218W	YJL218W	591 nt		4.07	□□□□□ -1.76
SHP1	P34223	YAE1	YJR067C	426 nt		4.07	□□□□□ -1.76
SHP1	P34223	RPL22A	YLR061W	366 nt		4.07	□□□□□ -1.76
SHP1	P34223	NRK1	YNL129W	723 nt		4.07	□□□□□ -1.76
SHP1	P34223	YNL144W-A	YNL144W-A	84 nt		4.07	□□□□□ -1.76
SHP1	P34223	MFM1	YPL060W	1242 nt		4.07	□□□□□ -1.76
SHP1	P34223	MDM30	YLR368W	1797 nt		4.07	□□□□□ -1.76
SHP1	P34223	CDC6	YJL194W	1542 nt		4.06	□□□□□ -1.76
SHP1	P34223	MGR3	YMR115W	1506 nt		4.06	□□□□□ -1.76
SHP1	P34223	VPS73	YGL104C	1461 nt		4.06	□□□□□ -1.76
SHP1	P34223	TEC1	YBR083W	1461 nt		4.06	□□□□□ -1.76
SHP1	P34223	YDR391C	YDR391C	699 nt		4.06	□□□□□ -1.76
SHP1	P34223	SAW1	YAL027W	786 nt		4.06	□□□□□ -1.76
SHP1	P34223	ISA1	YLL027W	753 nt		4.06	□□□□□ -1.76
SHP1	P34223	EAF7	YNL136W	1278 nt		4.06	□□□□□ -1.76
SHP1	P34223	POC4	YPL144W	447 nt		4.06	□□□□□ -1.76
SHP1	P34223	YND1	YER005W	1893 nt		4.06	□□□□□ -1.76
SHP1	P34223	MTC4	YBR255W	2085 nt		4.06	□□□□□ -1.76
SHP1	P34223	DBP5	YOR046C	1449 nt		4.05	□□□□□ -1.76
SHP1	P34223	MTC3	YGL226W	372 nt		4.05	□□□□□ -1.76
SHP1	P34223	PRE9	YGR135W	777 nt		4.05	□□□□□ -1.76
SHP1	P34223	YRA2	YKL214C	612 nt		4.05	□□□□□ -1.76
SHP1	P34223	MMM1	YLL006W	1281 nt		4.05	□□□□□ -1.76
SHP1	P34223	YLR285C-A	YLR285C-A	171 nt		4.05	□□□□□ -1.76
SHP1	P34223	FDH1	YOR388C	1131 nt		4.05	□□□□□ -1.76
SHP1	P34223	INA17	YPL099C	549 nt		4.05	□□□□□ -1.76
SHP1	P34223	CDC9	YDL164C	2268 nt		4.05	□□□□□ -1.76
SHP1	P34223	VPS53	YJL029C	2469 nt		4.04	□□□□□ -1.76
SHP1	P34223	YER077C	YER077C	2067 nt		4.04	□□□□□ -1.76
SHP1	P34223	GAT2	YMR136W	1683 nt		4.04	□□□□□ -1.76
SHP1	P34223	SHU2	YDR078C	672 nt		4.04	□□□□□ -1.76
SHP1	P34223	YFR045W	YFR045W	930 nt		4.04	□□□□□ -1.76
SHP1	P34223	ARC15	YIL062C	465 nt		4.04	□□□□□ -1.76
SHP1	P34223	RPF2	YKR081C	1035 nt		4.04	□□□□□ -1.76
SHP1	P34223	IZH4	YOL101C	939 nt		4.04	□□□□□ -1.76
SHP1	P34223	YOL118C	YOL118C	309 nt		4.04	□□□□□ -1.76
SHP1	P34223	YOR338W	YOR338W	1092 nt		4.04	□□□□□ -1.76
SHP1	P34223	YLR345W	YLR345W	1530 nt		4.04	□□□□□ -1.76
SHP1	P34223	CDC45	YLR103C	1953 nt		4.03	□□□□□ -1.76
SHP1	P34223	VAC7	YNL054W	3498 nt		4.03	□□□□□ -1.76
SHP1	P34223	ORC6	YHR118C	1308 nt		4.03	□□□□□ -1.76
SHP1	P34223	PRP9	YDL030W	1593 nt		4.03	□□□□□ -1.76
SHP1	P34223	SBE2	YDR351W	2595 nt		4.03	□□□□□ -1.76
SHP1	P34223	YCL076W	YCL076W	744 nt		4.03	□□□□□ -1.76
SHP1	P34223	AIM23	YJL131C	1071 nt		4.03	□□□□□ -1.76
SHP1	P34223	YJR071W	YJR071W	369 nt		4.03	□□□□□ -1.76
SHP1	P34223	OAR1	YKL055C	837 nt		4.03	□□□□□ -1.76
SHP1	P34223	USB1	YLR132C	873 nt		4.03	□□□□□ -1.76
SHP1	P34223	YNL171C	YNL171C	369 nt		4.03	□□□□□ -1.76
SHP1	P34223	DCP1	YOL149W	696 nt		4.03	□□□□□ -1.76
SHP1	P34223	MDM10	YAL010C	1482 nt		4.03	□□□□□ -1.76
SHP1	P34223	BOI2	YER114C	3123 nt		4.03	□□□□□ -1.76
SHP1	P34223	PUB1	YNL016W	1362 nt		4.02	□□□□□ -1.77
SHP1	P34223	HOM3	YER052C	1584 nt		4.02	□□□□□ -1.77
SHP1	P34223	GPI13	YLL031C	3054 nt		4.02	□□□□□ -1.77
SHP1	P34223	YDL157C	YDL157C	357 nt		4.02	□□□□□ -1.77
SHP1	P34223	SHR3	YDL212W	633 nt		4.02	□□□□□ -1.77
SHP1	P34223	SAE3	YHR079C-A	276 nt		4.02	□□□□□ -1.77
SHP1	P34223	YIL102C-A	YIL102C-A	228 nt		4.02	□□□□□ -1.77

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