Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC25.87■■□□□ 1.73
HLA-DOAP06340 RARRES2P11-201ENST00000635158 484 ntBASIC25.87■■□□□ 1.73
HLA-DOAP06340 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DOAP06340 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.87■■□□□ 1.73
HLA-DOAP06340 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DOAP06340 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
HLA-DOAP06340 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
HLA-DOAP06340 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC25.86■■□□□ 1.73
HLA-DOAP06340 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC25.86■■□□□ 1.73
HLA-DOAP06340 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.86■■□□□ 1.73
HLA-DOAP06340 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
HLA-DOAP06340 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC25.86■■□□□ 1.73
HLA-DOAP06340 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
HLA-DOAP06340 AC004911.1-201ENST00000416316 871 ntBASIC25.85■■□□□ 1.73
HLA-DOAP06340 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC25.85■■□□□ 1.73
HLA-DOAP06340 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC25.85■■□□□ 1.73
HLA-DOAP06340 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
HLA-DOAP06340 GALNS-213ENST00000569433 723 ntTSL 3 BASIC25.84■■□□□ 1.73
HLA-DOAP06340 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC25.84■■□□□ 1.73
HLA-DOAP06340 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
HLA-DOAP06340 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
HLA-DOAP06340 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC25.84■■□□□ 1.73
HLA-DOAP06340 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC25.83■■□□□ 1.73
HLA-DOAP06340 COX20-201ENST00000366528 568 ntTSL 2 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 AC090192.1-201ENST00000517740 490 ntBASIC25.83■■□□□ 1.73
HLA-DOAP06340 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC25.83■■□□□ 1.73
HLA-DOAP06340 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
HLA-DOAP06340 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
HLA-DOAP06340 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC25.82■■□□□ 1.72
HLA-DOAP06340 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
HLA-DOAP06340 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
HLA-DOAP06340 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.81■■□□□ 1.72
HLA-DOAP06340 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC25.81■■□□□ 1.72
HLA-DOAP06340 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
HLA-DOAP06340 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DOAP06340 ME3-201ENST00000323418 1068 ntTSL 5 BASIC25.8■■□□□ 1.72
HLA-DOAP06340 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC25.8■■□□□ 1.72
HLA-DOAP06340 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC25.8■■□□□ 1.72
HLA-DOAP06340 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC25.8■■□□□ 1.72
HLA-DOAP06340 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
HLA-DOAP06340 KRT18P61-201ENST00000585825 1298 ntBASIC25.8■■□□□ 1.72
HLA-DOAP06340 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DOAP06340 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DOAP06340 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DOAP06340 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DOAP06340 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
HLA-DOAP06340 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HLA-DOAP06340 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HLA-DOAP06340 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 DLX3-202ENST00000512495 834 ntTSL 2 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
HLA-DOAP06340 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
HLA-DOAP06340 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC25.79■■□□□ 1.72
HLA-DOAP06340 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.78■■□□□ 1.72
HLA-DOAP06340 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.78■■□□□ 1.72
HLA-DOAP06340 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.78■■□□□ 1.72
HLA-DOAP06340 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HLA-DOAP06340 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HLA-DOAP06340 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HLA-DOAP06340 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC25.78■■□□□ 1.72
HLA-DOAP06340 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC25.78■■□□□ 1.72
HLA-DOAP06340 LINC01960-201ENST00000563759 1884 ntBASIC25.78■■□□□ 1.72
HLA-DOAP06340 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
HLA-DOAP06340 AP004607.4-201ENST00000530158 1459 ntBASIC25.78■■□□□ 1.72
HLA-DOAP06340 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
HLA-DOAP06340 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC25.77■■□□□ 1.72
HLA-DOAP06340 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC25.77■■□□□ 1.72
HLA-DOAP06340 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC25.77■■□□□ 1.72
HLA-DOAP06340 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC25.77■■□□□ 1.72
HLA-DOAP06340 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
HLA-DOAP06340 AC004854.2-201ENST00000608450 1441 ntBASIC25.77■■□□□ 1.72
HLA-DOAP06340 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
HLA-DOAP06340 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms