Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Mtcl1-201ENSMUST00000086693 7221 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Arhgap39-204ENSMUST00000176219 542 ntTSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Ndfip1-201ENSMUST00000025293 930 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Gjd3-201ENSMUST00000062931 837 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Ube2k-206ENSMUST00000201984 1449 ntTSL 3 BASIC14.23□□□□□ -0.13
Trav16d-dv11A0A075B617 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Gm43592-201ENSMUST00000196922 1165 ntBASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Tesmin-201ENSMUST00000025840 2234 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Tmem131-208ENSMUST00000194563 6698 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trav16d-dv11A0A075B617 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Jtb-201ENSMUST00000029546 1101 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 A830010M20Rik-202ENSMUST00000094541 1134 ntTSL 5 BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.13
Trav16d-dv11A0A075B617 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
Trav16d-dv11A0A075B617 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Fam105a-203ENSMUST00000226170 3043 ntBASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Abhd11-201ENSMUST00000046999 1493 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
Trav16d-dv11A0A075B617 Grk6-206ENSMUST00000224995 2971 ntBASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Stxbp5-209ENSMUST00000141722 4702 ntAPPRIS P2 TSL 5 BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Map6-206ENSMUST00000208605 2275 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC14.19□□□□□ -0.14
Trav16d-dv11A0A075B617 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav16d-dv11A0A075B617 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav16d-dv11A0A075B617 Gm10461-201ENSMUST00000202073 4786 ntBASIC14.18□□□□□ -0.14
Trav16d-dv11A0A075B617 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav16d-dv11A0A075B617 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav16d-dv11A0A075B617 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
Trav16d-dv11A0A075B617 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 34 ms