Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13CQ709C8 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13CQ709C8 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13CQ709C8 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
VPS13CQ709C8 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
VPS13CQ709C8 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC18.48■□□□□ 0.55
VPS13CQ709C8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13CQ709C8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13CQ709C8 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13CQ709C8 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.47■□□□□ 0.55
VPS13CQ709C8 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13CQ709C8 SPI1-203ENST00000533030 661 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13CQ709C8 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC18.47■□□□□ 0.55
VPS13CQ709C8 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
VPS13CQ709C8 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.47■□□□□ 0.55
VPS13CQ709C8 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
VPS13CQ709C8 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 ABCB10P4-201ENST00000566803 2184 ntBASIC18.46■□□□□ 0.55
VPS13CQ709C8 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13CQ709C8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13CQ709C8 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13CQ709C8 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13CQ709C8 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13CQ709C8 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
VPS13CQ709C8 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.46■□□□□ 0.55
VPS13CQ709C8 AC138932.3-201ENST00000567634 1902 ntBASIC18.46■□□□□ 0.54
VPS13CQ709C8 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 RPS2P52-201ENST00000469610 820 ntBASIC18.45■□□□□ 0.54
VPS13CQ709C8 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
VPS13CQ709C8 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
VPS13CQ709C8 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
VPS13CQ709C8 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS13CQ709C8 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 DUX4L16-201ENST00000555130 1264 ntBASIC18.44■□□□□ 0.54
VPS13CQ709C8 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 AC145676.1-201ENST00000514988 2004 ntBASIC18.44■□□□□ 0.54
VPS13CQ709C8 AC004687.1-201ENST00000579003 1625 ntBASIC18.44■□□□□ 0.54
VPS13CQ709C8 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
VPS13CQ709C8 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.44■□□□□ 0.54
VPS13CQ709C8 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC18.44■□□□□ 0.54
VPS13CQ709C8 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
VPS13CQ709C8 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13CQ709C8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS13CQ709C8 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13CQ709C8 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC18.43■□□□□ 0.54
VPS13CQ709C8 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.54
VPS13CQ709C8 AC079630.1-202ENST00000618127 1840 ntBASIC18.43■□□□□ 0.54
VPS13CQ709C8 MED17-227ENST00000640521 2047 ntTSL 5 BASIC18.43■□□□□ 0.54
VPS13CQ709C8 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
VPS13CQ709C8 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13CQ709C8 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13CQ709C8 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13CQ709C8 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13CQ709C8 DUX4L4-201ENST00000566884 1269 ntBASIC18.42■□□□□ 0.54
VPS13CQ709C8 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13CQ709C8 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS13CQ709C8 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS13CQ709C8 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13CQ709C8 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC18.41■□□□□ 0.54
VPS13CQ709C8 KRT87P-202ENST00000534226 1464 ntBASIC18.41■□□□□ 0.54
VPS13CQ709C8 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS13CQ709C8 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS13CQ709C8 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms