Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 AC010141.3-201ENST00000456659 717 ntBASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 SMUG1P1-201ENST00000590640 811 ntBASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.84■□□□□ 0.77
RNFT1Q5M7Z0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC19.83■□□□□ 0.77
RNFT1Q5M7Z0 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNFT1Q5M7Z0 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
RNFT1Q5M7Z0 BX005040.4-201ENST00000637145 1518 ntBASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
RNFT1Q5M7Z0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 USP45-205ENST00000472914 1617 ntTSL 5 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
RNFT1Q5M7Z0 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 AC087239.1-201ENST00000622671 572 ntBASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 DUSP8P3-201ENST00000399571 1760 ntBASIC19.8■□□□□ 0.76
RNFT1Q5M7Z0 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
RNFT1Q5M7Z0 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 OXCT2P1-201ENST00000447263 1535 ntBASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC19.78■□□□□ 0.76
RNFT1Q5M7Z0 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms