Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
HttP42859 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC21.27■□□□□ 0.99
HttP42859 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
HttP42859 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC21.26■□□□□ 0.99
HttP42859 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Cfap36-201ENSMUST00000020754 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Ube2q1-201ENSMUST00000038356 3077 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
HttP42859 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
HttP42859 Dvl1-208ENSMUST00000168552 2776 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
HttP42859 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
HttP42859 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
HttP42859 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
HttP42859 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HttP42859 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC21.24■□□□□ 0.99
HttP42859 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HttP42859 Rnf208-201ENSMUST00000060818 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HttP42859 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
HttP42859 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC21.23■□□□□ 0.99
HttP42859 Homer3-203ENSMUST00000110124 2445 ntAPPRIS ALT1 TSL 5 BASIC21.23■□□□□ 0.99
HttP42859 Mir5122-201ENSMUST00000175004 89 ntBASIC21.23■□□□□ 0.99
HttP42859 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
HttP42859 Arhgap9-204ENSMUST00000219511 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
HttP42859 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HttP42859 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
HttP42859 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
HttP42859 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
HttP42859 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
HttP42859 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HttP42859 AC154649.1-201ENSMUST00000227392 384 ntBASIC21.22■□□□□ 0.99
HttP42859 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
HttP42859 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HttP42859 Dio3-201ENSMUST00000097228 1449 ntBASIC21.22■□□□□ 0.99
HttP42859 Mir1199-201ENSMUST00000117015 119 ntBASIC21.22■□□□□ 0.99
HttP42859 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
HttP42859 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
HttP42859 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC21.22■□□□□ 0.99
HttP42859 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HttP42859 Avp-201ENSMUST00000046001 577 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
HttP42859 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
HttP42859 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
HttP42859 Gm20472-201ENSMUST00000174403 1240 ntBASIC21.22■□□□□ 0.99
HttP42859 Ezh2-203ENSMUST00000114616 2670 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
HttP42859 Mir6236-201ENSMUST00000184437 123 ntBASIC21.21■□□□□ 0.99
HttP42859 Gm10517-202ENSMUST00000192970 758 ntBASIC21.21■□□□□ 0.99
HttP42859 Akt1-201ENSMUST00000001780 2690 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
HttP42859 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
HttP42859 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
HttP42859 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.2■□□□□ 0.98
HttP42859 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
HttP42859 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
HttP42859 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
HttP42859 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
HttP42859 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.2■□□□□ 0.98
HttP42859 Gm21362-201ENSMUST00000194272 928 ntBASIC21.2■□□□□ 0.98
HttP42859 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC21.2■□□□□ 0.98
HttP42859 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
HttP42859 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HttP42859 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
HttP42859 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC21.19■□□□□ 0.98
HttP42859 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
HttP42859 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
HttP42859 Gm10167-201ENSMUST00000150411 1479 ntBASIC21.19■□□□□ 0.98
HttP42859 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HttP42859 Tcf4-246ENSMUST00000202116 2986 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
HttP42859 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
HttP42859 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HttP42859 P4ha3-201ENSMUST00000057023 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
HttP42859 Ccnd3-ps-201ENSMUST00000117963 881 ntBASIC21.17■□□□□ 0.98
HttP42859 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC21.17■□□□□ 0.98
HttP42859 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC21.17■□□□□ 0.98
HttP42859 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
HttP42859 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
HttP42859 Shisa5-202ENSMUST00000112059 1910 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
HttP42859 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC21.16■□□□□ 0.98
HttP42859 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
HttP42859 Gm27741-201ENSMUST00000185060 237 ntBASIC21.16■□□□□ 0.98
HttP42859 Gm43403-201ENSMUST00000198011 1786 ntBASIC21.16■□□□□ 0.98
HttP42859 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HttP42859 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HttP42859 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
HttP42859 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
HttP42859 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
HttP42859 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
HttP42859 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
HttP42859 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HttP42859 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
HttP42859 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
HttP42859 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 16.5 ms