Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.83■□□□□ 0.92
CPSF4O95639 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CPSF4O95639 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CPSF4O95639 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CPSF4O95639 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.82■□□□□ 0.92
CPSF4O95639 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.82■□□□□ 0.92
CPSF4O95639 AC137767.1-201ENST00000602918 1920 ntBASIC20.82■□□□□ 0.92
CPSF4O95639 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CPSF4O95639 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CPSF4O95639 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CPSF4O95639 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CPSF4O95639 C11orf96-202ENST00000528572 1834 ntBASIC20.81■□□□□ 0.92
CPSF4O95639 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CPSF4O95639 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CPSF4O95639 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CPSF4O95639 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
CPSF4O95639 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC20.81■□□□□ 0.92
CPSF4O95639 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CPSF4O95639 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.81■□□□□ 0.92
CPSF4O95639 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
CPSF4O95639 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.8■□□□□ 0.92
CPSF4O95639 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CPSF4O95639 LINC01960-201ENST00000563759 1884 ntBASIC20.8■□□□□ 0.92
CPSF4O95639 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 AC009299.2-201ENST00000482477 511 ntBASIC20.8■□□□□ 0.92
CPSF4O95639 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CPSF4O95639 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.8■□□□□ 0.92
CPSF4O95639 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CPSF4O95639 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CPSF4O95639 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CPSF4O95639 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.79■□□□□ 0.92
CPSF4O95639 AC004687.1-201ENST00000579003 1625 ntBASIC20.79■□□□□ 0.92
CPSF4O95639 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.79■□□□□ 0.92
CPSF4O95639 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
CPSF4O95639 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.79■□□□□ 0.92
CPSF4O95639 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.79■□□□□ 0.92
CPSF4O95639 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CPSF4O95639 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
CPSF4O95639 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
CPSF4O95639 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.78■□□□□ 0.92
CPSF4O95639 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
CPSF4O95639 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.78■□□□□ 0.92
CPSF4O95639 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CPSF4O95639 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.77■□□□□ 0.92
CPSF4O95639 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC20.77■□□□□ 0.92
CPSF4O95639 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4O95639 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4O95639 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4O95639 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CPSF4O95639 AL451085.2-201ENST00000605085 799 ntBASIC20.77■□□□□ 0.92
CPSF4O95639 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CPSF4O95639 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
CPSF4O95639 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
CPSF4O95639 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC20.76■□□□□ 0.91
CPSF4O95639 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
CPSF4O95639 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.76■□□□□ 0.91
CPSF4O95639 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.76■□□□□ 0.91
CPSF4O95639 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.76■□□□□ 0.91
CPSF4O95639 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CPSF4O95639 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CPSF4O95639 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
CPSF4O95639 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.75■□□□□ 0.91
CPSF4O95639 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.75■□□□□ 0.91
CPSF4O95639 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4O95639 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC20.75■□□□□ 0.91
CPSF4O95639 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4O95639 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4O95639 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4O95639 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
CPSF4O95639 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
CPSF4O95639 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
CPSF4O95639 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.6 ms