Protein–RNA interactions for Protein: A0A075B617

Trav16d-dv11, T cell receptor alpha variable 16D-DV11 (Fragment), mousemouse

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav16d-dv11A0A075B617 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav16d-dv11A0A075B617 Rbm38-201ENSMUST00000029014 1768 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav16d-dv11A0A075B617 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav16d-dv11A0A075B617 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
Trav16d-dv11A0A075B617 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
Trav16d-dv11A0A075B617 Letm1-201ENSMUST00000005431 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Spata6-213ENSMUST00000153746 1444 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Shroom3-211ENSMUST00000225438 5742 ntBASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 AC126028.2-201ENSMUST00000228100 1833 ntBASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Ssfa2-203ENSMUST00000111788 4976 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
Trav16d-dv11A0A075B617 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Anks6-202ENSMUST00000107747 3980 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Atp11a-201ENSMUST00000033818 7549 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
Trav16d-dv11A0A075B617 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Zbtb8a-201ENSMUST00000030610 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Stn1-201ENSMUST00000049369 1992 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Clta-202ENSMUST00000107846 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Trav16d-dv11A0A075B617 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Ssbp4-201ENSMUST00000049908 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Nt5dc3-201ENSMUST00000099396 5952 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Jmy-201ENSMUST00000065537 8776 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Cryzl1-203ENSMUST00000117644 1727 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
Trav16d-dv11A0A075B617 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Trav16d-dv11A0A075B617 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Smad5-203ENSMUST00000109876 4570 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Amh-201ENSMUST00000036016 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Rhbdd3-202ENSMUST00000101610 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Emc6-201ENSMUST00000054952 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Eri1-201ENSMUST00000033927 5079 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trav16d-dv11A0A075B617 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 32.8 ms