Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 FP325331.1-202ENST00000623531 1380 ntBASIC21.08■□□□□ 0.96
CLHC1Q8NHS4 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.96
CLHC1Q8NHS4 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CLHC1Q8NHS4 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CLHC1Q8NHS4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CLHC1Q8NHS4 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.05■□□□□ 0.96
CLHC1Q8NHS4 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 DUX4L4-201ENST00000566884 1269 ntBASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 AC092053.2-201ENST00000640557 1818 ntBASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 AC004687.1-201ENST00000579003 1625 ntBASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CLHC1Q8NHS4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 AC009086.3-201ENST00000623486 1008 ntBASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 LINC01960-201ENST00000563759 1884 ntBASIC21.03■□□□□ 0.96
CLHC1Q8NHS4 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 PKD1P6-201ENST00000343738 4769 ntBASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLHC1Q8NHS4 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
CLHC1Q8NHS4 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLHC1Q8NHS4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CLHC1Q8NHS4 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
CLHC1Q8NHS4 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 UNC93B8-201ENST00000511903 705 ntBASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.01■□□□□ 0.95
CLHC1Q8NHS4 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
CLHC1Q8NHS4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLHC1Q8NHS4 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLHC1Q8NHS4 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLHC1Q8NHS4 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC21■□□□□ 0.95
CLHC1Q8NHS4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CLHC1Q8NHS4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
CLHC1Q8NHS4 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21■□□□□ 0.95
CLHC1Q8NHS4 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 C11orf96-202ENST00000528572 1834 ntBASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 C17orf82-201ENST00000623772 1530 ntBASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 CREM-229ENST00000474362 1030 ntTSL 2 BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.99■□□□□ 0.95
CLHC1Q8NHS4 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms