Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Rhov-201ENSMUST00000037360 1703 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Syne3Q4FZC9 Hsf1-204ENSMUST00000226872 2104 ntBASIC20.68■□□□□ 0.9
Syne3Q4FZC9 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Syne3Q4FZC9 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Syne3Q4FZC9 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.68■□□□□ 0.9
Syne3Q4FZC9 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Gm10941-201ENSMUST00000105408 708 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Gm27454-201ENSMUST00000185090 204 ntBASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Syne3Q4FZC9 Bicdl2-201ENSMUST00000062967 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Hpse-202ENSMUST00000112908 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Pafah1b1-201ENSMUST00000021091 5803 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Syne3Q4FZC9 Klhl15-205ENSMUST00000113916 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Gm5112-201ENSMUST00000204407 2368 ntBASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Gpr137-204ENSMUST00000099782 1742 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Syne3Q4FZC9 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.9
Syne3Q4FZC9 B430218F22Rik-201ENSMUST00000181168 1495 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Gm27045-201ENSMUST00000182145 1402 ntBASIC20.64■□□□□ 0.89
Syne3Q4FZC9 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Syne3Q4FZC9 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Syne3Q4FZC9 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Dhx33-204ENSMUST00000124464 1835 ntTSL 5 BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Syne3Q4FZC9 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Asph-201ENSMUST00000038564 1174 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Asph-205ENSMUST00000098275 1007 ntTSL 5 BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Syne3Q4FZC9 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 24.2 ms