Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Ptchd3Q0EEE2 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Ankrd33b-202ENSMUST00000076942 1641 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Gm5784-201ENSMUST00000179344 2478 ntBASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ptchd3Q0EEE2 Fbxl5-204ENSMUST00000119523 2801 ntTSL 5 BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Stk3-202ENSMUST00000067033 2471 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ptchd3Q0EEE2 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ptchd3Q0EEE2 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 4930507D05Rik-201ENSMUST00000181110 1834 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 6330403K07Rik-201ENSMUST00000156068 1494 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ptchd3Q0EEE2 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Rgs10-205ENSMUST00000145739 564 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ptchd3Q0EEE2 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Efr3a-203ENSMUST00000172756 1411 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ptchd3Q0EEE2 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Gm14117-201ENSMUST00000122417 843 ntBASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Qtrt1-201ENSMUST00000002902 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ptchd3Q0EEE2 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Rps24-207ENSMUST00000224568 714 ntBASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Sec61a2-201ENSMUST00000026926 756 ntTSL 5 BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Acbd6-203ENSMUST00000097529 1255 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ptchd3Q0EEE2 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 28 ms