Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PDGFBP01127 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
PDGFBP01127 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
PDGFBP01127 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFBP01127 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.44■■□□□ 1.18
PDGFBP01127 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFBP01127 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
PDGFBP01127 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC22.44■■□□□ 1.18
PDGFBP01127 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC22.44■■□□□ 1.18
PDGFBP01127 SMUG1P1-201ENST00000590640 811 ntBASIC22.44■■□□□ 1.18
PDGFBP01127 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC22.43■■□□□ 1.18
PDGFBP01127 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.42■■□□□ 1.18
PDGFBP01127 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC22.42■■□□□ 1.18
PDGFBP01127 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PDGFBP01127 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC22.42■■□□□ 1.18
PDGFBP01127 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC22.42■■□□□ 1.18
PDGFBP01127 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.42■■□□□ 1.18
PDGFBP01127 UBE2DNL-204ENST00000602536 740 ntBASIC22.42■■□□□ 1.18
PDGFBP01127 AC104187.1-201ENST00000607510 612 ntBASIC22.42■■□□□ 1.18
PDGFBP01127 CPT2-209ENST00000636935 803 ntTSL 5 BASIC22.42■■□□□ 1.18
PDGFBP01127 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC22.42■■□□□ 1.18
PDGFBP01127 TMEM202-AS1-202ENST00000565181 2325 ntBASIC22.42■■□□□ 1.18
PDGFBP01127 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC22.41■■□□□ 1.18
PDGFBP01127 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PDGFBP01127 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PDGFBP01127 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC22.41■■□□□ 1.18
PDGFBP01127 RNA5SP413-201ENST00000516373 109 ntBASIC22.41■■□□□ 1.18
PDGFBP01127 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC22.41■■□□□ 1.18
PDGFBP01127 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.41■■□□□ 1.18
PDGFBP01127 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC22.41■■□□□ 1.18
PDGFBP01127 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC22.41■■□□□ 1.18
PDGFBP01127 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC22.41■■□□□ 1.18
PDGFBP01127 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PDGFBP01127 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
PDGFBP01127 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
PDGFBP01127 LINC01529-204ENST00000636474 1715 ntBASIC22.4■■□□□ 1.18
PDGFBP01127 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC22.4■■□□□ 1.18
PDGFBP01127 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PDGFBP01127 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PDGFBP01127 PARP1-202ENST00000366792 553 ntTSL 3 BASIC22.4■■□□□ 1.18
PDGFBP01127 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PDGFBP01127 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
PDGFBP01127 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC22.4■■□□□ 1.18
PDGFBP01127 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PDGFBP01127 AC073210.2-201ENST00000430369 194 ntBASIC22.4■■□□□ 1.18
PDGFBP01127 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC22.4■■□□□ 1.18
PDGFBP01127 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.4■■□□□ 1.18
PDGFBP01127 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
PDGFBP01127 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC22.4■■□□□ 1.18
PDGFBP01127 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
PDGFBP01127 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.39■■□□□ 1.18
PDGFBP01127 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
PDGFBP01127 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC22.39■■□□□ 1.17
PDGFBP01127 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.17
PDGFBP01127 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC22.39■■□□□ 1.17
PDGFBP01127 AF201337.1-201ENST00000520239 748 ntBASIC22.39■■□□□ 1.17
PDGFBP01127 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.39■■□□□ 1.17
PDGFBP01127 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC22.39■■□□□ 1.17
PDGFBP01127 AC105036.2-201ENST00000569468 176 ntBASIC22.39■■□□□ 1.17
PDGFBP01127 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC22.39■■□□□ 1.17
PDGFBP01127 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.39■■□□□ 1.17
PDGFBP01127 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
PDGFBP01127 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.38■■□□□ 1.17
PDGFBP01127 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
PDGFBP01127 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
PDGFBP01127 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.38■■□□□ 1.17
PDGFBP01127 AC098590.1-201ENST00000468126 897 ntBASIC22.38■■□□□ 1.17
PDGFBP01127 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC22.38■■□□□ 1.17
PDGFBP01127 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC22.38■■□□□ 1.17
PDGFBP01127 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
PDGFBP01127 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
PDGFBP01127 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC22.38■■□□□ 1.17
PDGFBP01127 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC22.37■■□□□ 1.17
PDGFBP01127 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
PDGFBP01127 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC22.37■■□□□ 1.17
PDGFBP01127 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC22.37■■□□□ 1.17
PDGFBP01127 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC22.37■■□□□ 1.17
PDGFBP01127 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC22.36■■□□□ 1.17
PDGFBP01127 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PDGFBP01127 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDGFBP01127 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDGFBP01127 AC144652.1-201ENST00000609974 1624 ntBASIC22.36■■□□□ 1.17
PDGFBP01127 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PDGFBP01127 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
PDGFBP01127 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
PDGFBP01127 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDGFBP01127 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
PDGFBP01127 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDGFBP01127 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
PDGFBP01127 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC22.35■■□□□ 1.17
PDGFBP01127 BRI3-207ENST00000539286 699 ntTSL 2 BASIC22.35■■□□□ 1.17
PDGFBP01127 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
PDGFBP01127 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC22.35■■□□□ 1.17
PDGFBP01127 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 17.2 ms