Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cldn1O88551 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
Cldn1O88551 Gm10612-201ENSMUST00000162198 1681 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
Cldn1O88551 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC16.71■□□□□ 0.27
Cldn1O88551 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC16.71■□□□□ 0.27
Cldn1O88551 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC16.71■□□□□ 0.27
Cldn1O88551 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC16.71■□□□□ 0.27
Cldn1O88551 Gm22240-201ENSMUST00000175225 82 ntBASIC16.71■□□□□ 0.27
Cldn1O88551 Gm27151-202ENSMUST00000185015 1145 ntTSL 5 BASIC16.71■□□□□ 0.27
Cldn1O88551 Ap3s1-204ENSMUST00000225520 957 ntBASIC16.71■□□□□ 0.27
Cldn1O88551 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC16.71■□□□□ 0.27
Cldn1O88551 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Tmem120b-201ENSMUST00000067505 2164 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Cldn1O88551 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 1700030C10Rik-203ENSMUST00000189625 1735 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.7■□□□□ 0.26
Cldn1O88551 Gm7514-201ENSMUST00000209475 934 ntBASIC16.7■□□□□ 0.26
Cldn1O88551 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
Cldn1O88551 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
Cldn1O88551 Mknk2-205ENSMUST00000200082 3439 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Cldn1O88551 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC16.69■□□□□ 0.26
Cldn1O88551 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Cldn1O88551 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Gm14281-201ENSMUST00000121700 1294 ntBASIC16.69■□□□□ 0.26
Cldn1O88551 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Cldn1O88551 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Cotl1-202ENSMUST00000168698 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Cldn1O88551 Dgcr6-209ENSMUST00000155387 1415 ntTSL 3 BASIC16.69■□□□□ 0.26
Cldn1O88551 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC16.68■□□□□ 0.26
Cldn1O88551 D130020L05Rik-202ENSMUST00000220889 769 ntTSL 3 BASIC16.68■□□□□ 0.26
Cldn1O88551 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Prmt1-202ENSMUST00000107843 1508 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Cldn1O88551 Gm45869-201ENSMUST00000210335 1704 ntTSL 5 BASIC16.67■□□□□ 0.26
Cldn1O88551 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cldn1O88551 Hoxa2-201ENSMUST00000014848 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cldn1O88551 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Cldn1O88551 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cldn1O88551 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC16.67■□□□□ 0.26
Cldn1O88551 Mir5133-201ENSMUST00000174955 77 ntBASIC16.67■□□□□ 0.26
Cldn1O88551 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Cldn1O88551 Gm4968-201ENSMUST00000071458 858 ntBASIC16.67■□□□□ 0.26
Cldn1O88551 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cldn1O88551 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Cldn1O88551 Sort1-203ENSMUST00000135636 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Cldn1O88551 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Gm32051-202ENSMUST00000197905 2385 ntBASIC16.66■□□□□ 0.26
Cldn1O88551 March11-201ENSMUST00000126304 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.66■□□□□ 0.26
Cldn1O88551 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC16.66■□□□□ 0.26
Cldn1O88551 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC16.66■□□□□ 0.26
Cldn1O88551 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Cldn1O88551 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Rnaseh2b-201ENSMUST00000022499 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Cldn1O88551 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Gm42555-201ENSMUST00000199304 1039 ntBASIC16.65■□□□□ 0.26
Cldn1O88551 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Cldn1O88551 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC16.65■□□□□ 0.26
Cldn1O88551 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 177 ms