Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Mtx1-202ENSMUST00000118964 1445 ntTSL 5 BASIC16.22■□□□□ 0.19
Hmgb3O54879 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Tbxa2r-201ENSMUST00000105325 1765 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Hmgb3O54879 Cacnb4-201ENSMUST00000078324 8225 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb3O54879 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb3O54879 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Hmgb3O54879 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC16.21■□□□□ 0.19
Hmgb3O54879 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC16.21■□□□□ 0.19
Hmgb3O54879 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC16.21■□□□□ 0.19
Hmgb3O54879 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
Hmgb3O54879 Slc35b2-201ENSMUST00000041353 2326 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
Hmgb3O54879 Gm27502-201ENSMUST00000183495 199 ntBASIC16.2■□□□□ 0.18
Hmgb3O54879 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC16.2■□□□□ 0.18
Hmgb3O54879 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
Hmgb3O54879 Nt5m-201ENSMUST00000102695 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 A030005K14Rik-201ENSMUST00000193762 1093 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Hmgb3O54879 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.19■□□□□ 0.18
Hmgb3O54879 Marcks-201ENSMUST00000092584 4048 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
Hmgb3O54879 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Hmgb3O54879 Rb1cc1-201ENSMUST00000027040 7607 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Golph3-205ENSMUST00000228671 2842 ntBASIC16.18■□□□□ 0.18
Hmgb3O54879 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Nkx2-5-201ENSMUST00000015723 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC16.18■□□□□ 0.18
Hmgb3O54879 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
Hmgb3O54879 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
Hmgb3O54879 Creb3l1-201ENSMUST00000028663 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC16.17■□□□□ 0.18
Hmgb3O54879 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
Hmgb3O54879 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Hmgb3O54879 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Hmgb3O54879 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Hmgb3O54879 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Hmgb3O54879 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Hmgb3O54879 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC16.16■□□□□ 0.18
Hmgb3O54879 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC16.16■□□□□ 0.18
Hmgb3O54879 Slc30a4-202ENSMUST00000099457 3170 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Hmgb3O54879 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Hmgb3O54879 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
Hmgb3O54879 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Hmgb3O54879 Zfp334-201ENSMUST00000103084 8205 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Hs3st6-201ENSMUST00000044922 1219 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Ptprt-201ENSMUST00000109441 6623 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Cux2-201ENSMUST00000086317 5113 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Hmgb3O54879 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
Hmgb3O54879 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Hmgb3O54879 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Hmgb3O54879 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Hmgb3O54879 Cnpy3-201ENSMUST00000059844 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Hmgb3O54879 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
Hmgb3O54879 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
Hmgb3O54879 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC16.14■□□□□ 0.17
Hmgb3O54879 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Hmgb3O54879 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms