Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 C1orf229-201ENST00000623686 2258 ntBASIC21.14■□□□□ 0.97
TRIM40Q6P9F5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM40Q6P9F5 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
TRIM40Q6P9F5 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
TRIM40Q6P9F5 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 DUX4L19-201ENST00000557448 1267 ntBASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.12■□□□□ 0.97
TRIM40Q6P9F5 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 AC006455.2-201ENST00000429931 906 ntBASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
TRIM40Q6P9F5 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 AL499627.2-201ENST00000606283 725 ntBASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 pRNA.6-201ENST00000610482 90 ntBASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 pRNA.5-201ENST00000612139 90 ntBASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 pRNA.11-201ENST00000618423 90 ntBASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 pRNA.13-201ENST00000619112 90 ntBASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM40Q6P9F5 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 SYT6-210ENST00000641643 1587 ntBASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
TRIM40Q6P9F5 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM40Q6P9F5 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM40Q6P9F5 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
TRIM40Q6P9F5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM40Q6P9F5 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM40Q6P9F5 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM40Q6P9F5 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
TRIM40Q6P9F5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM40Q6P9F5 AC004687.1-201ENST00000579003 1625 ntBASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 223.4 ms