Protein–RNA interactions for Protein: P48412

UPF3, Nonsense-mediated mRNA decay protein 3, yeastyeast

Known RBP Predictions only

Length 387 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UPF3P48412 RRP8YDR083W 1179 nt4.48□□□□□ -1.69
UPF3P48412 RIP1YEL024W 648 nt4.48□□□□□ -1.69
UPF3P48412 PIR3YKL163W 978 nt4.48□□□□□ -1.69
UPF3P48412 HTA2YBL003C 399 nt4.48□□□□□ -1.69
UPF3P48412 YOR314WYOR314W 330 nt4.48□□□□□ -1.69
UPF3P48412 YPR174CYPR174C 666 nt4.48□□□□□ -1.69
UPF3P48412 GDE1YPL110C 3672 nt4.48□□□□□ -1.69
UPF3P48412 RIM21YNL294C 1602 nt4.47□□□□□ -1.69
UPF3P48412 PDR5YOR153W 4536 nt4.47□□□□□ -1.69
UPF3P48412 RPS11AYDR025W 471 nt4.47□□□□□ -1.69
UPF3P48412 GLO4YOR040W 858 nt4.47□□□□□ -1.69
UPF3P48412 ROK1YGL171W 1695 nt4.47□□□□□ -1.69
UPF3P48412 KGD1YIL125W 3045 nt4.47□□□□□ -1.69
UPF3P48412 YFL040WYFL040W 1623 nt4.46□□□□□ -1.69
UPF3P48412 SSB1YDL229W 1842 nt4.46□□□□□ -1.69
UPF3P48412 YDL186WYDL186W 834 nt4.46□□□□□ -1.7
UPF3P48412 TAF10YDR167W 621 nt4.46□□□□□ -1.7
UPF3P48412 YDR545C-AYDR545C-A 480 nt4.46□□□□□ -1.7
UPF3P48412 YEL077W-AYEL077W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YER190C-BYER190C-B 483 nt4.46□□□□□ -1.7
UPF3P48412 YFL068WYFL068W 483 nt4.46□□□□□ -1.7
UPF3P48412 OKP1YGR179C 1221 nt4.46□□□□□ -1.7
UPF3P48412 YGR296C-BYGR296C-B 483 nt4.46□□□□□ -1.7
UPF3P48412 tR(ACG)JtR(ACG)J 73 nt4.46□□□□□ -1.7
UPF3P48412 YHL050W-AYHL050W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YHR219C-AYHR219C-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YIL177W-AYIL177W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YJL225W-AYJL225W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YLL066W-AYLL066W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YLL067W-AYLL067W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YLR466C-AYLR466C-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YLR467C-AYLR467C-A 483 nt4.46□□□□□ -1.7
UPF3P48412 MRPL39YML009C 213 nt4.46□□□□□ -1.7
UPF3P48412 YML133W-BYML133W-B 483 nt4.46□□□□□ -1.7
UPF3P48412 YIF1YNL263C 945 nt4.46□□□□□ -1.7
UPF3P48412 YNL296WYNL296W 315 nt4.46□□□□□ -1.7
UPF3P48412 YNL339W-BYNL339W-B 483 nt4.46□□□□□ -1.7
UPF3P48412 YBL113W-AYBL113W-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YOR338WYOR338W 1092 nt4.46□□□□□ -1.7
UPF3P48412 YOR396C-AYOR396C-A 483 nt4.46□□□□□ -1.7
UPF3P48412 YAR1YPL239W 603 nt4.46□□□□□ -1.7
UPF3P48412 YPL283W-BYPL283W-B 483 nt4.46□□□□□ -1.7
UPF3P48412 YPR169W-AYPR169W-A 219 nt4.46□□□□□ -1.7
UPF3P48412 YPR170W-BYPR170W-B 258 nt4.46□□□□□ -1.7
UPF3P48412 YPR204C-AYPR204C-A 483 nt4.46□□□□□ -1.7
UPF3P48412 OM14YBR230C 405 nt4.46□□□□□ -1.7
UPF3P48412 RIT1YMR283C 1542 nt4.46□□□□□ -1.7
UPF3P48412 VAC17YCL063W 1272 nt4.45□□□□□ -1.7
UPF3P48412 CTH1YDR151C 978 nt4.45□□□□□ -1.7
UPF3P48412 TFB3YDR460W 966 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)CtK(CUU)C 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)D1tK(CUU)D1 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)D2tK(CUU)D2 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)E1tK(CUU)E1 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)E2tK(CUU)E2 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)FtK(CUU)F 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)G1tK(CUU)G1 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)G2tK(CUU)G2 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)G3tK(CUU)G3 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)ItK(CUU)I 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)JtK(CUU)J 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)KtK(CUU)K 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)MtK(CUU)M 73 nt4.45□□□□□ -1.7
UPF3P48412 tK(CUU)PtK(CUU)P 73 nt4.45□□□□□ -1.7
UPF3P48412 UAF30YOR295W 687 nt4.45□□□□□ -1.7
UPF3P48412 OPY1YBR129C 987 nt4.45□□□□□ -1.7
UPF3P48412 ARC40YBR234C 1155 nt4.45□□□□□ -1.7
UPF3P48412 EFM2YBR271W 1260 nt4.45□□□□□ -1.7
UPF3P48412 YCL001W-AYCL001W-A 462 nt4.45□□□□□ -1.7
UPF3P48412 MNN1YER001W 2289 nt4.45□□□□□ -1.7
UPF3P48412 RTS1YOR014W 2274 nt4.45□□□□□ -1.7
UPF3P48412 LYS2YBR115C 4179 nt4.45□□□□□ -1.7
UPF3P48412 YER158CYER158C 1722 nt4.44□□□□□ -1.7
UPF3P48412 YCL076WYCL076W 744 nt4.44□□□□□ -1.7
UPF3P48412 YCR007CYCR007C 720 nt4.44□□□□□ -1.7
UPF3P48412 GTF1YGR102C 552 nt4.44□□□□□ -1.7
UPF3P48412 MIC26YGR235C 702 nt4.44□□□□□ -1.7
UPF3P48412 EBP2YKL172W 1284 nt4.44□□□□□ -1.7
UPF3P48412 SEC65YML105C 822 nt4.44□□□□□ -1.7
UPF3P48412 YNL162W-AYNL162W-A 219 nt4.44□□□□□ -1.7
UPF3P48412 BUD17YNR027W 954 nt4.44□□□□□ -1.7
UPF3P48412 AIF1YNR074C 1137 nt4.44□□□□□ -1.7
UPF3P48412 YBR016WYBR016W 387 nt4.44□□□□□ -1.7
UPF3P48412 TAF14YPL129W 735 nt4.44□□□□□ -1.7
UPF3P48412 SUT2YPR009W 807 nt4.44□□□□□ -1.7
UPF3P48412 CDC15YAR019C 2925 nt4.44□□□□□ -1.7
UPF3P48412 YML020WYML020W 1995 nt4.44□□□□□ -1.7
UPF3P48412 PRS5YOL061W 1491 nt4.43□□□□□ -1.7
UPF3P48412 GSM1YJL103C 1857 nt4.43□□□□□ -1.7
UPF3P48412 KAR5YMR065W 1515 nt4.43□□□□□ -1.7
UPF3P48412 HAP4YKL109W 1665 nt4.43□□□□□ -1.7
UPF3P48412 YCR015CYCR015C 954 nt4.43□□□□□ -1.7
UPF3P48412 IMP2YMR035W 534 nt4.43□□□□□ -1.7
UPF3P48412 RUF20RUF20 443 nt4.43□□□□□ -1.7
UPF3P48412 MCK1YNL307C 1128 nt4.43□□□□□ -1.7
UPF3P48412 YNR042WYNR042W 429 nt4.43□□□□□ -1.7
UPF3P48412 SSP2YOR242C 1116 nt4.43□□□□□ -1.7
UPF3P48412 VPS27YNR006W 1869 nt4.43□□□□□ -1.7
UPF3P48412 AKL1YBR059C 3327 nt4.43□□□□□ -1.7
UPF3P48412 EAR1YMR171C 1653 nt4.42□□□□□ -1.7
Retrieved 100 of 7,029 protein–RNA pairs in 18.8 ms