Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC004911.1-201ENST00000416316 871 ntBASIC21.76■■□□□ 1.07
SDC3O75056 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.76■■□□□ 1.07
SDC3O75056 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SDC3O75056 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.76■■□□□ 1.07
SDC3O75056 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SDC3O75056 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
SDC3O75056 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SDC3O75056 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.75■■□□□ 1.07
SDC3O75056 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SDC3O75056 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.75■■□□□ 1.07
SDC3O75056 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.75■■□□□ 1.07
SDC3O75056 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.75■■□□□ 1.07
SDC3O75056 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.75■■□□□ 1.07
SDC3O75056 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 KRT18P14-201ENST00000534205 1250 ntBASIC21.75■■□□□ 1.07
SDC3O75056 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
SDC3O75056 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
SDC3O75056 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
SDC3O75056 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
SDC3O75056 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.74■■□□□ 1.07
SDC3O75056 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 NT5C3AP1-201ENST00000394500 1012 ntBASIC21.74■■□□□ 1.07
SDC3O75056 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.74■■□□□ 1.07
SDC3O75056 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.74■■□□□ 1.07
SDC3O75056 NTF6G-201ENST00000591094 616 ntBASIC21.74■■□□□ 1.07
SDC3O75056 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.74■■□□□ 1.07
SDC3O75056 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SDC3O75056 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.74■■□□□ 1.07
SDC3O75056 LINC02228-203ENST00000641970 1355 ntBASIC21.74■■□□□ 1.07
SDC3O75056 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SDC3O75056 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SDC3O75056 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.73■■□□□ 1.07
SDC3O75056 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
SDC3O75056 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SDC3O75056 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SDC3O75056 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SDC3O75056 AC105233.4-201ENST00000642045 216 ntBASIC21.73■■□□□ 1.07
SDC3O75056 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SDC3O75056 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
SDC3O75056 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SDC3O75056 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SDC3O75056 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.72■■□□□ 1.07
SDC3O75056 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
SDC3O75056 AP005435.1-201ENST00000529293 1178 ntBASIC21.72■■□□□ 1.07
SDC3O75056 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.72■■□□□ 1.07
SDC3O75056 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SDC3O75056 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.71■■□□□ 1.07
SDC3O75056 TERF1P2-201ENST00000583350 1212 ntBASIC21.71■■□□□ 1.07
SDC3O75056 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
SDC3O75056 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.71■■□□□ 1.07
SDC3O75056 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.71■■□□□ 1.07
SDC3O75056 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
SDC3O75056 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SDC3O75056 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
SDC3O75056 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
SDC3O75056 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SDC3O75056 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SDC3O75056 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.7■■□□□ 1.06
SDC3O75056 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SDC3O75056 MPST-204ENST00000404393 1329 ntTSL 5 BASIC21.7■■□□□ 1.06
SDC3O75056 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SDC3O75056 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SDC3O75056 LINC01124-201ENST00000409786 2117 ntBASIC21.7■■□□□ 1.06
SDC3O75056 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
SDC3O75056 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
SDC3O75056 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
SDC3O75056 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.69■■□□□ 1.06
SDC3O75056 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.69■■□□□ 1.06
SDC3O75056 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.69■■□□□ 1.06
SDC3O75056 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.69■■□□□ 1.06
SDC3O75056 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SDC3O75056 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SDC3O75056 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
SDC3O75056 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.68■■□□□ 1.06
SDC3O75056 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms