Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIME1Q9H400 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC19.51■□□□□ 0.71
LIME1Q9H400 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
LIME1Q9H400 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIME1Q9H400 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.5■□□□□ 0.71
LIME1Q9H400 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIME1Q9H400 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.5■□□□□ 0.71
LIME1Q9H400 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIME1Q9H400 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC19.5■□□□□ 0.71
LIME1Q9H400 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC19.5■□□□□ 0.71
LIME1Q9H400 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.5■□□□□ 0.71
LIME1Q9H400 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L2-201ENST00000561772 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L6-201ENST00000626483 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L1-201ENST00000627662 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L8-201ENST00000629013 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L3-201ENST00000630187 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L7-201ENST00000630678 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 DUX4L5-201ENST00000630834 1275 ntBASIC19.5■□□□□ 0.71
LIME1Q9H400 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.5■□□□□ 0.71
LIME1Q9H400 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIME1Q9H400 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIME1Q9H400 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIME1Q9H400 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC19.49■□□□□ 0.71
LIME1Q9H400 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIME1Q9H400 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIME1Q9H400 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIME1Q9H400 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.49■□□□□ 0.71
LIME1Q9H400 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LIME1Q9H400 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.49■□□□□ 0.71
LIME1Q9H400 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.49■□□□□ 0.71
LIME1Q9H400 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC19.49■□□□□ 0.71
LIME1Q9H400 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.49■□□□□ 0.71
LIME1Q9H400 AC241377.3-202ENST00000626088 1088 ntBASIC19.49■□□□□ 0.71
LIME1Q9H400 AC241585.3-202ENST00000628937 1088 ntBASIC19.49■□□□□ 0.71
LIME1Q9H400 AC245100.8-202ENST00000629247 1058 ntBASIC19.49■□□□□ 0.71
LIME1Q9H400 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.49■□□□□ 0.71
LIME1Q9H400 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIME1Q9H400 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
LIME1Q9H400 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
LIME1Q9H400 YBX1P1-201ENST00000445822 960 ntBASIC19.48■□□□□ 0.71
LIME1Q9H400 SLC47A1P1-202ENST00000449666 945 ntBASIC19.48■□□□□ 0.71
LIME1Q9H400 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
LIME1Q9H400 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIME1Q9H400 HLA-L-211ENST00000482052 1765 ntBASIC19.47■□□□□ 0.71
LIME1Q9H400 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
LIME1Q9H400 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIME1Q9H400 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.47■□□□□ 0.71
LIME1Q9H400 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC19.47■□□□□ 0.71
LIME1Q9H400 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIME1Q9H400 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.47■□□□□ 0.71
LIME1Q9H400 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC19.47■□□□□ 0.71
LIME1Q9H400 AC126544.1-201ENST00000580842 1059 ntBASIC19.47■□□□□ 0.71
LIME1Q9H400 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC19.47■□□□□ 0.71
LIME1Q9H400 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.47■□□□□ 0.71
LIME1Q9H400 AC009086.3-201ENST00000623486 1008 ntBASIC19.47■□□□□ 0.71
LIME1Q9H400 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.47■□□□□ 0.71
LIME1Q9H400 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
LIME1Q9H400 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
LIME1Q9H400 C9orf163-202ENST00000624034 2573 ntBASIC19.46■□□□□ 0.71
LIME1Q9H400 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIME1Q9H400 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIME1Q9H400 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
LIME1Q9H400 STK32C-205ENST00000456004 607 ntTSL 2 BASIC19.46■□□□□ 0.71
LIME1Q9H400 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.46■□□□□ 0.71
LIME1Q9H400 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.46■□□□□ 0.71
LIME1Q9H400 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.46■□□□□ 0.71
LIME1Q9H400 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC19.46■□□□□ 0.71
LIME1Q9H400 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC19.46■□□□□ 0.71
LIME1Q9H400 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIME1Q9H400 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.45■□□□□ 0.7
LIME1Q9H400 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.45■□□□□ 0.7
LIME1Q9H400 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
LIME1Q9H400 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC19.45■□□□□ 0.7
LIME1Q9H400 RAB43-208ENST00000615093 783 ntTSL 5 BASIC19.45■□□□□ 0.7
LIME1Q9H400 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.45■□□□□ 0.7
LIME1Q9H400 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
LIME1Q9H400 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.45■□□□□ 0.7
LIME1Q9H400 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIME1Q9H400 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.45■□□□□ 0.7
LIME1Q9H400 TSPY26P-201ENST00000476365 1326 ntBASIC19.45■□□□□ 0.7
LIME1Q9H400 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
LIME1Q9H400 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIME1Q9H400 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
LIME1Q9H400 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.44■□□□□ 0.7
LIME1Q9H400 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIME1Q9H400 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
LIME1Q9H400 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.44■□□□□ 0.7
LIME1Q9H400 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC19.44■□□□□ 0.7
LIME1Q9H400 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIME1Q9H400 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIME1Q9H400 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
LIME1Q9H400 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
LIME1Q9H400 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.44■□□□□ 0.7
LIME1Q9H400 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.43■□□□□ 0.7
LIME1Q9H400 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
LIME1Q9H400 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 18.4 ms