Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim39Q9ESN2 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim39Q9ESN2 Gm43545-201ENSMUST00000196765 2779 ntBASIC18.33■□□□□ 0.53
Trim39Q9ESN2 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Trim39Q9ESN2 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC18.33■□□□□ 0.53
Trim39Q9ESN2 Cltb-202ENSMUST00000091609 2186 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Tpm1-212ENSMUST00000113696 1714 ntTSL 2 BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Sp5-201ENSMUST00000100043 2100 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Gm14117-201ENSMUST00000122417 843 ntBASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Ovol2-201ENSMUST00000037423 1539 ntAPPRIS P4 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Bcas2-201ENSMUST00000005830 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 B630019K06Rik-201ENSMUST00000064196 2583 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
Trim39Q9ESN2 AC122428.2-201ENSMUST00000216321 1832 ntBASIC18.33■□□□□ 0.52
Trim39Q9ESN2 Gabbr1-201ENSMUST00000025338 5248 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Stx2-202ENSMUST00000100680 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Slc36a4-202ENSMUST00000115588 1745 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
Trim39Q9ESN2 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Zfp653-202ENSMUST00000179605 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Hoxd3os1-204ENSMUST00000156342 796 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Gm45102-201ENSMUST00000207427 857 ntBASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 3110053B16Rik-202ENSMUST00000140360 2004 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Trim39Q9ESN2 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Fah-201ENSMUST00000032865 1585 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Gab2-202ENSMUST00000206791 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Timm8a1-201ENSMUST00000054213 1421 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
Trim39Q9ESN2 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Klc3-201ENSMUST00000047170 1901 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Cdkl3-210ENSMUST00000121591 2387 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Gm2464-202ENSMUST00000194841 877 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
Trim39Q9ESN2 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Gm28417-201ENSMUST00000185218 785 ntTSL 3 BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Trim39Q9ESN2 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Yjefn3-202ENSMUST00000152938 785 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Pgp-201ENSMUST00000053024 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Trim39Q9ESN2 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC18.27■□□□□ 0.51
Trim39Q9ESN2 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim39Q9ESN2 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim39Q9ESN2 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Trim39Q9ESN2 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Hoxa9-202ENSMUST00000114425 851 ntTSL 2 BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Hrh3-203ENSMUST00000164442 1242 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Thoc6-201ENSMUST00000047436 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Trim39Q9ESN2 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms