Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
VPS33AQ96AX1 AC137767.1-201ENST00000602918 1920 ntBASIC21.32■■□□□ 1
VPS33AQ96AX1 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.32■■□□□ 1
VPS33AQ96AX1 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.32■■□□□ 1
VPS33AQ96AX1 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21.32■■□□□ 1
VPS33AQ96AX1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.32■■□□□ 1
VPS33AQ96AX1 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC21.32■■□□□ 1
VPS33AQ96AX1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
VPS33AQ96AX1 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.31■■□□□ 1
VPS33AQ96AX1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS33AQ96AX1 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS33AQ96AX1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS33AQ96AX1 KRT18P24-201ENST00000344739 1156 ntBASIC21.31■■□□□ 1
VPS33AQ96AX1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.31■■□□□ 1
VPS33AQ96AX1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
VPS33AQ96AX1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.3■■□□□ 1
VPS33AQ96AX1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
VPS33AQ96AX1 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.3■■□□□ 1
VPS33AQ96AX1 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.3■■□□□ 1
VPS33AQ96AX1 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
VPS33AQ96AX1 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.3■■□□□ 1
VPS33AQ96AX1 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.29■■□□□ 1
VPS33AQ96AX1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
VPS33AQ96AX1 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.29■■□□□ 1
VPS33AQ96AX1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS33AQ96AX1 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS33AQ96AX1 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS33AQ96AX1 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC21.29■■□□□ 1
VPS33AQ96AX1 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC21.29■■□□□ 1
VPS33AQ96AX1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.29■■□□□ 1
VPS33AQ96AX1 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
VPS33AQ96AX1 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
VPS33AQ96AX1 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC21.29■■□□□ 1
VPS33AQ96AX1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC21.28■■□□□ 1
VPS33AQ96AX1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS33AQ96AX1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
VPS33AQ96AX1 BEX3-202ENST00000372634 753 ntTSL 2 BASIC21.28■■□□□ 1
VPS33AQ96AX1 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC21.28■■□□□ 1
VPS33AQ96AX1 AC004987.1-201ENST00000428627 508 ntBASIC21.28■■□□□ 1
VPS33AQ96AX1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS33AQ96AX1 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
VPS33AQ96AX1 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC21.28■■□□□ 1
VPS33AQ96AX1 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.27■■□□□ 1
VPS33AQ96AX1 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS33AQ96AX1 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
VPS33AQ96AX1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC21.27■■□□□ 1
VPS33AQ96AX1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS33AQ96AX1 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS33AQ96AX1 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
VPS33AQ96AX1 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS33AQ96AX1 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VPS33AQ96AX1 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 ATP5G2P3-201ENST00000429083 425 ntBASIC21.26■□□□□ 0.99
VPS33AQ96AX1 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 AC010980.1-201ENST00000587192 1142 ntBASIC21.26■□□□□ 0.99
VPS33AQ96AX1 AC139530.1-201ENST00000575312 1977 ntBASIC21.26■□□□□ 0.99
VPS33AQ96AX1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VPS33AQ96AX1 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VPS33AQ96AX1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VPS33AQ96AX1 AC080038.3-201ENST00000623346 1952 ntBASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms