Protein–RNA interactions for Protein: Q62231

Six1, Homeobox protein SIX1, mousemouse

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six1Q62231 Gm5522-201ENSMUST00000189483 1242 ntBASIC20.43■□□□□ 0.86
Six1Q62231 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Six1Q62231 Xpa-202ENSMUST00000058232 1241 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Six1Q62231 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC20.43■□□□□ 0.86
Six1Q62231 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Six1Q62231 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC20.42■□□□□ 0.86
Six1Q62231 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Six1Q62231 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Six1Q62231 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Six1Q62231 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Gm28050-202ENSMUST00000131029 663 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 1700016H13Rik-205ENSMUST00000134926 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Gm42501-201ENSMUST00000200220 1026 ntBASIC20.41■□□□□ 0.86
Six1Q62231 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC20.41■□□□□ 0.86
Six1Q62231 Gm15820-201ENSMUST00000201566 728 ntBASIC20.41■□□□□ 0.86
Six1Q62231 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Mrpl38-201ENSMUST00000106439 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Ccdc50-201ENSMUST00000039443 2192 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Tbc1d25-204ENSMUST00000172020 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Six1Q62231 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Gng12-202ENSMUST00000114222 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.4■□□□□ 0.86
Six1Q62231 Cd37-204ENSMUST00000209779 2541 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Six1Q62231 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.86
Six1Q62231 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.39■□□□□ 0.86
Six1Q62231 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six1Q62231 Ubald2-201ENSMUST00000057676 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six1Q62231 E130307A14Rik-202ENSMUST00000133302 438 ntTSL 5 BASIC20.39■□□□□ 0.85
Six1Q62231 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six1Q62231 Socs1-201ENSMUST00000038099 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Six1Q62231 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Six1Q62231 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Six1Q62231 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Six1Q62231 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Six1Q62231 Gpn2-202ENSMUST00000105899 996 ntTSL 5 BASIC20.38■□□□□ 0.85
Six1Q62231 Pth2-202ENSMUST00000210086 481 ntTSL 2 BASIC20.38■□□□□ 0.85
Six1Q62231 Gm5812-201ENSMUST00000061073 957 ntBASIC20.38■□□□□ 0.85
Six1Q62231 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Six1Q62231 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
Six1Q62231 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
Six1Q62231 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Six1Q62231 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Six1Q62231 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Six1Q62231 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC20.37■□□□□ 0.85
Six1Q62231 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Six1Q62231 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Six1Q62231 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.37■□□□□ 0.85
Six1Q62231 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.37■□□□□ 0.85
Six1Q62231 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Six1Q62231 Krt8-ps-201ENSMUST00000208495 945 ntBASIC20.37■□□□□ 0.85
Six1Q62231 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Six1Q62231 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Six1Q62231 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
Six1Q62231 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Scamp3-202ENSMUST00000098941 1338 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.36■□□□□ 0.85
Six1Q62231 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC20.36■□□□□ 0.85
Six1Q62231 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
Six1Q62231 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
Six1Q62231 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Six1Q62231 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Six1Q62231 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Gm7417-201ENSMUST00000192950 473 ntBASIC20.35■□□□□ 0.85
Six1Q62231 Map1lc3a-201ENSMUST00000029128 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Rps19bp1-201ENSMUST00000052499 830 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Six1Q62231 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Six1Q62231 Ascl1-201ENSMUST00000020243 2481 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Six1Q62231 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Six1Q62231 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC20.34■□□□□ 0.85
Six1Q62231 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.34■□□□□ 0.85
Six1Q62231 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Six1Q62231 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Six1Q62231 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Six1Q62231 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Retrieved 100 of 76,532 protein–RNA pairs in 29.6 ms